Variant report

Variant	rs62373358
Chromosome Location	chr5:124652407-124652408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1444651	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56144112	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373330	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62373331	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62373332	1.00[AMR][1000 genomes]
rs62373333	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62373334	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62373335	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62373353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373359	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62374660	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62374662	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62374665	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62374666	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72781173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72781177	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72781179	0.96[EUR][1000 genomes]
rs72781189	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs751656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124649400-124672400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124650000-124652600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:124650600-124655200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:124650800-124653000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:124650800-124654400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:124651000-124653000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:124651200-124652600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:124651800-124652600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:124651800-124653400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:124651800-124653600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr5:124652000-124652800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr5:124652000-124652800	Enhancers	Osteobl	bone
13	chr5:124652000-124653800	Enhancers	Fetal Brain Male	brain
14	chr5:124652200-124652600	Weak transcription	Fetal Intestine Large	intestine
15	chr5:124652200-124653000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr5:124652400-124652600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr5:124652400-124653200	Weak transcription	A549	lung
18	chr5:124652400-124653400	Enhancers	Fetal Intestine Small	intestine
19	chr5:124652400-124653600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:124652400-124653600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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