Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1444651	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56144112	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373330	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62373331	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62373332	1.00[AMR][1000 genomes]
rs62373333	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62373334	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62373335	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62373353	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373359	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62374660	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62374662	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62374665	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62374666	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72781173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72781177	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72781179	0.96[EUR][1000 genomes]
rs72781189	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs751656	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124648200-124649800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:124648200-124651800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:124648400-124651800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:124648400-124651800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:124648400-124652000	Weak transcription	Osteobl	bone
6	chr5:124648800-124650000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
7	chr5:124649400-124650000	ZNF genes & repeats	Fetal Intestine Small	intestine
8	chr5:124649400-124672400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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