Variant report

Variant	rs62374665
Chromosome Location	chr5:124670061-124670062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1444651	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56144112	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62373330	0.89[AMR][1000 genomes]
rs62373331	0.89[AMR][1000 genomes]
rs62373332	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62373333	0.89[AMR][1000 genomes]
rs62373334	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62373335	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62373353	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62373356	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62373357	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62373358	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62373359	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62374660	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62374662	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62374666	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62374669	0.85[EUR][1000 genomes]
rs62374670	0.85[EUR][1000 genomes]
rs62374671	0.83[EUR][1000 genomes]
rs62374673	0.83[EUR][1000 genomes]
rs62374685	0.83[EUR][1000 genomes]
rs62374686	0.83[EUR][1000 genomes]
rs62374687	0.83[EUR][1000 genomes]
rs72781173	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72781177	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72781179	0.82[EUR][1000 genomes]
rs72781189	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs751656	0.89[AMR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124649400-124672400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124661800-124675800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:124663400-124672200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:124663800-124672200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:124667200-124672400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:124667400-124672400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:124667600-124672200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:124667600-124672400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:124667600-124673000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:124668000-124672400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:124668200-124672200	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:124668600-124672800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:124668600-124682200	Weak transcription	Fetal Brain Male	brain
14	chr5:124670000-124672800	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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