Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1444651	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56144112	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373330	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62373331	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62373332	1.00[AMR][1000 genomes]
rs62373333	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62373334	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62373335	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62373353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373359	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62374660	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62374662	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62374665	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62374666	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72781177	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72781179	0.96[EUR][1000 genomes]
rs72781189	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs751656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124649400-124672400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124650600-124655200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:124653600-124659000	Weak transcription	Brain Substantia Nigra	brain
4	chr5:124653600-124661400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:124653600-124661600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr5:124653800-124654600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:124653800-124655000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:124653800-124658800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:124653800-124659200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:124653800-124659200	Weak transcription	Fetal Brain Male	brain
11	chr5:124653800-124661400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr5:124654200-124658800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:124654200-124661800	Weak transcription	Brain Germinal Matrix	brain
14	chr5:124654400-124655000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr5:124654400-124658800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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