Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1444651	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56144112	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62373330	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62373331	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62373332	0.96[AMR][1000 genomes]
rs62373333	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62373334	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62373335	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62373353	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62373356	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62373357	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62373358	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62374660	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62374662	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62374665	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62374666	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72781173	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72781177	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72781179	0.94[EUR][1000 genomes]
rs72781189	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs751656	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124649400-124672400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124650600-124655200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:124650800-124654400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:124652000-124653800	Enhancers	Fetal Brain Male	brain
5	chr5:124652600-124654200	Enhancers	Brain Germinal Matrix	brain
6	chr5:124652600-124654400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:124652800-124653800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:124653000-124653800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr5:124653400-124654200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:124653600-124653800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:124653600-124653800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:124653600-124653800	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr5:124653600-124659000	Weak transcription	Brain Substantia Nigra	brain
14	chr5:124653600-124661400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr5:124653600-124661600	Weak transcription	Brain Cingulate Gyrus	brain

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