The 2.0 version of rSNPBase

Variant report

Variant rs62455878
Chromosome Location chr7:5809042-5809043
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:5762000-5820400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr7:5781400-5816800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr7:5784000-5819600 Weak transcription Fetal Heart heart
4 chr7:5790800-5820400 Weak transcription Placenta Amnion Placenta Amnion
5 chr7:5792600-5816600 Weak transcription Right Ventricle heart
6 chr7:5792800-5813400 Weak transcription Small Intestine intestine
7 chr7:5792800-5813600 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr7:5792800-5820000 Weak transcription Fetal Kidney kidney
9 chr7:5792800-5820200 Weak transcription H1 Cell Line embryonic stem cell
10 chr7:5792800-5820200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr7:5792800-5820200 Weak transcription H9 Cell Line embryonic stem cell
12 chr7:5795200-5812800 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr7:5795400-5813200 Weak transcription HMEC breast
14 chr7:5798800-5818800 Weak transcription Brain Germinal Matrix brain
15 chr7:5798800-5820400 Weak transcription Esophagus oesophagus
16 chr7:5799200-5814600 Weak transcription Primary B cells from cord blood blood
17 chr7:5799200-5816600 Weak transcription Fetal Brain Female brain
18 chr7:5799200-5819000 Weak transcription Fetal Brain Male brain
19 chr7:5799200-5819600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr7:5799200-5820200 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr7:5799600-5820200 Weak transcription Thymus Thymus
22 chr7:5799800-5816600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr7:5800200-5809200 Weak transcription Primary hematopoietic stem cells short term culture blood
24 chr7:5800200-5809200 Weak transcription Lung lung
25 chr7:5800200-5809400 Weak transcription Fetal Stomach stomach
26 chr7:5800200-5818200 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr7:5800400-5809400 Weak transcription Primary B cells from peripheral blood blood
28 chr7:5800400-5813000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr7:5800400-5813200 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr7:5800400-5813200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr7:5800400-5813200 Weak transcription Stomach Smooth Muscle stomach
32 chr7:5800400-5813400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr7:5800400-5813400 Weak transcription Monocytes-CD14+_RO01746 blood
34 chr7:5800400-5813600 Weak transcription Primary hematopoietic stem cells blood
35 chr7:5800400-5813600 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr7:5800400-5813600 Weak transcription GM12878-XiMat blood
37 chr7:5800400-5814400 Weak transcription Fetal Thymus thymus
38 chr7:5800400-5815400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
39 chr7:5800400-5816200 Weak transcription Fetal Intestine Large intestine
40 chr7:5800400-5816600 Weak transcription Spleen Spleen
41 chr7:5800400-5816800 Weak transcription Placenta Placenta
42 chr7:5800400-5819600 Weak transcription iPS-18 Cell Line embryonic stem cell
43 chr7:5800600-5809200 Weak transcription Primary monocytes fromperipheralblood blood
44 chr7:5800600-5811200 Weak transcription Primary T regulatory cells fromperipheralblood blood
45 chr7:5800600-5813600 Weak transcription Primary T cells from cord blood blood
46 chr7:5800600-5816600 Weak transcription Duodenum Mucosa Duodenum
47 chr7:5800600-5819000 Weak transcription Brain Substantia Nigra brain
48 chr7:5800600-5819600 Weak transcription Liver Liver
49 chr7:5800800-5813000 Weak transcription Primary T cells fromperipheralblood blood
50 chr7:5800800-5813200 Weak transcription Dnd41 blood

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Last update: Aug 31, 2015