The 2.0 version of rSNPBase

Variant report

Variant rs1725187
Chromosome Location chr7:5647422-5647423
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:5636200-5662000 Weak transcription Fetal Kidney kidney
2 chr7:5636600-5661400 Weak transcription Rectal Smooth Muscle rectum
3 chr7:5636800-5661200 Weak transcription Colon Smooth Muscle Colon
4 chr7:5638400-5648200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr7:5638400-5659000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr7:5638800-5661200 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr7:5638800-5671000 Weak transcription Right Atrium heart
8 chr7:5639000-5655200 Weak transcription Duodenum Mucosa Duodenum
9 chr7:5639000-5661200 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr7:5639200-5647600 Weak transcription Stomach Mucosa stomach
11 chr7:5639600-5648600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr7:5641200-5648400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr7:5641600-5659000 Weak transcription Thymus Thymus
14 chr7:5641800-5648400 Strong transcription Cortex derived primary cultured neurospheres brain
15 chr7:5641800-5648600 Strong transcription Fetal Intestine Small intestine
16 chr7:5641800-5648600 Strong transcription NHLF lung
17 chr7:5642000-5648400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr7:5642000-5648400 Genic enhancers Fetal Muscle Trunk muscle
19 chr7:5642000-5648600 Strong transcription Breast Myoepithelial Primary Cells Breast
20 chr7:5642000-5650600 Genic enhancers Fetal Muscle Leg muscle
21 chr7:5642200-5648400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
22 chr7:5642200-5648400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr7:5642200-5653400 Weak transcription Stomach Smooth Muscle stomach
24 chr7:5642800-5664800 Weak transcription Hela-S3 cervix
25 chr7:5643400-5648000 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr7:5643600-5660000 Weak transcription Colonic Mucosa Colon
27 chr7:5643800-5648200 Weak transcription K562 blood
28 chr7:5643800-5649000 Weak transcription Primary hematopoietic stem cells blood
29 chr7:5643800-5649000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr7:5643800-5649000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr7:5643800-5649200 Weak transcription HepG2 liver
32 chr7:5643800-5650200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr7:5643800-5653200 Weak transcription HSMMtube muscle
34 chr7:5643800-5660400 Weak transcription Monocytes-CD14+_RO01746 blood
35 chr7:5643800-5661200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
36 chr7:5644000-5659200 Weak transcription Pancreas Pancrea
37 chr7:5644600-5648600 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr7:5645000-5648200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr7:5645000-5655200 Weak transcription Gastric stomach
40 chr7:5645000-5661200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr7:5645000-5661400 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr7:5645000-5662000 Weak transcription iPS-18 Cell Line embryonic stem cell
43 chr7:5645000-5662200 Weak transcription GM12878-XiMat blood
44 chr7:5645200-5649000 Weak transcription HUVEC blood vessel
45 chr7:5645200-5650200 Weak transcription Adipose Nuclei Adipose
46 chr7:5645200-5650400 Weak transcription HUES64 Cell Line embryonic stem cell
47 chr7:5645200-5652400 Weak transcription Brain Substantia Nigra brain
48 chr7:5645200-5659000 Weak transcription Aorta Aorta
49 chr7:5645400-5658600 Weak transcription Fetal Intestine Large intestine
50 chr7:5645400-5661000 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015