Variant report

Variant	rs62559861
Chromosome Location	chr9:100006991-100006992
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:99999075..100002333-chr9:100004185..100008617,4	K562	blood:
2	chr9:99999075..100001905-chr9:100002725..100008617,7	K562	blood:

Variant related genes	Relation type
ENSG00000203279	Chromatin interaction
ENSG00000197816	Chromatin interaction
ENSG00000254876	Chromatin interaction
ENSG00000254483	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1048451	0.82[EUR][1000 genomes]
rs10521029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817337	0.82[EUR][1000 genomes]
rs10817504	0.82[EUR][1000 genomes]
rs10981297	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10981367	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10981444	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10981784	0.83[EUR][1000 genomes]
rs10981800	0.83[EUR][1000 genomes]
rs10981801	0.83[EUR][1000 genomes]
rs1123379	0.83[EUR][1000 genomes]
rs11581	0.83[EUR][1000 genomes]
rs12378350	0.82[EUR][1000 genomes]
rs12550923	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12551818	0.83[EUR][1000 genomes]
rs12553213	0.83[EUR][1000 genomes]
rs12554363	0.83[EUR][1000 genomes]
rs12554887	0.86[AMR][1000 genomes]
rs12555277	0.83[EUR][1000 genomes]
rs13286510	0.83[EUR][1000 genomes]
rs13287082	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13289134	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13292715	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13300328	0.83[EUR][1000 genomes]
rs13301045	0.83[EUR][1000 genomes]
rs1564048	0.83[EUR][1000 genomes]
rs1564050	0.83[EUR][1000 genomes]
rs16919506	0.83[EUR][1000 genomes]
rs2045730	0.83[EUR][1000 genomes]
rs2045731	0.83[EUR][1000 genomes]
rs2306090	0.83[EUR][1000 genomes]
rs2306092	0.83[EUR][1000 genomes]
rs2401384	0.83[EUR][1000 genomes]
rs34476799	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34609282	0.83[EUR][1000 genomes]
rs34754033	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34905303	0.83[EUR][1000 genomes]
rs34954690	0.83[EUR][1000 genomes]
rs35066943	0.83[EUR][1000 genomes]
rs35534888	0.83[EUR][1000 genomes]
rs35590659	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35623544	0.83[EUR][1000 genomes]
rs35778461	0.81[EUR][1000 genomes]
rs35778718	0.83[EUR][1000 genomes]
rs35788892	0.83[EUR][1000 genomes]
rs3747490	0.83[EUR][1000 genomes]
rs3747491	0.83[EUR][1000 genomes]
rs3747492	0.83[EUR][1000 genomes]
rs3747510	0.83[EUR][1000 genomes]
rs3827484	0.83[EUR][1000 genomes]
rs4742686	0.83[EUR][1000 genomes]
rs4742688	0.83[EUR][1000 genomes]
rs4743069	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4743070	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4743082	0.83[EUR][1000 genomes]
rs4743083	0.83[EUR][1000 genomes]
rs4743085	0.83[EUR][1000 genomes]
rs4743086	0.83[EUR][1000 genomes]
rs60681062	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62556659	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6478038	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6478039	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7020530	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7041222	0.83[EUR][1000 genomes]
rs7872669	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7874652	0.83[EUR][1000 genomes]
rs898869	0.83[EUR][1000 genomes]
rs898870	0.81[EUR][1000 genomes]
rs9696058	0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62559861	VN1R51P	cis	Thyroid	GTEx

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100001200-100011000	Weak transcription	Lung	lung
2	chr9:100001200-100017000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:100001200-100039400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:100001400-100010800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:100001400-100014000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr9:100001400-100017600	Weak transcription	Left Ventricle	heart
7	chr9:100001400-100017800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr9:100001600-100012800	Weak transcription	Fetal Kidney	kidney
9	chr9:100001600-100014000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:100001600-100022200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:100001600-100037400	Weak transcription	Primary T cells from cord blood	blood
12	chr9:100001800-100012800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr9:100002000-100010400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr9:100002000-100011000	Weak transcription	Fetal Stomach	stomach
15	chr9:100002000-100011600	Weak transcription	Pancreas	Pancrea
16	chr9:100002000-100013200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:100002000-100013400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr9:100002000-100015200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:100002000-100016600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr9:100002000-100016600	Weak transcription	Thymus	Thymus
21	chr9:100002000-100018000	Weak transcription	Fetal Muscle Leg	muscle
22	chr9:100002000-100023000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr9:100002000-100025400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:100002000-100037400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr9:100002000-100037800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr9:100002000-100038600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr9:100002000-100038600	Weak transcription	Fetal Intestine Large	intestine
28	chr9:100002000-100038600	Weak transcription	Fetal Intestine Small	intestine
29	chr9:100002000-100038800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr9:100002000-100038800	Weak transcription	Ovary	ovary
31	chr9:100002000-100038800	Weak transcription	Right Ventricle	heart
32	chr9:100002000-100039000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr9:100002000-100039600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr9:100002000-100039600	Weak transcription	Adipose Nuclei	Adipose
35	chr9:100002000-100039600	Weak transcription	Colon Smooth Muscle	Colon
36	chr9:100002000-100039600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr9:100002000-100040400	Weak transcription	Spleen	Spleen
38	chr9:100002200-100010800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr9:100002200-100013000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr9:100002200-100014600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr9:100002200-100038800	Weak transcription	Liver	Liver
42	chr9:100002200-100039400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr9:100002200-100039400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr9:100002400-100010200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr9:100002400-100010600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr9:100002400-100037400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr9:100003200-100017600	Weak transcription	Dnd41	blood
48	chr9:100006200-100010400	Weak transcription	Osteobl	bone
49	chr9:100006800-100010800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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