Variant report

Variant	rs35590659
Chromosome Location	chr9:33503078-33503079
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NOL6-4	chr9:33502957-33503090	NONHSAT130733

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10521029	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10817337	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10817384	0.83[EUR][1000 genomes]
rs10981297	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10981367	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10981444	0.81[EUR][1000 genomes]
rs10981460	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10981688	0.83[EUR][1000 genomes]
rs12115447	0.82[EUR][1000 genomes]
rs12115448	0.80[EUR][1000 genomes]
rs12377538	0.83[EUR][1000 genomes]
rs12550923	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12551740	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12552101	0.82[EUR][1000 genomes]
rs12552659	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12553155	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12553259	0.81[EUR][1000 genomes]
rs12554887	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13287082	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13289134	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13292715	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13301965	0.83[EUR][1000 genomes]
rs1531440	0.82[EUR][1000 genomes]
rs16919661	0.81[EUR][1000 genomes]
rs16919671	0.82[EUR][1000 genomes]
rs16919675	0.82[EUR][1000 genomes]
rs2045729	0.83[EUR][1000 genomes]
rs2279113	0.83[EUR][1000 genomes]
rs2290933	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2306094	0.83[EUR][1000 genomes]
rs34135027	0.86[EUR][1000 genomes]
rs34183765	0.82[EUR][1000 genomes]
rs34355647	0.83[EUR][1000 genomes]
rs34476799	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34564795	0.83[EUR][1000 genomes]
rs34616426	0.83[EUR][1000 genomes]
rs34754033	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34870571	0.82[EUR][1000 genomes]
rs35737497	0.82[EUR][1000 genomes]
rs3747495	0.83[EUR][1000 genomes]
rs3747498	0.82[EUR][1000 genomes]
rs3747499	0.82[EUR][1000 genomes]
rs3747504	0.82[EUR][1000 genomes]
rs3747507	0.83[EUR][1000 genomes]
rs3747511	0.82[EUR][1000 genomes]
rs3827485	0.80[EUR][1000 genomes]
rs3994560	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41316960	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4743069	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4743070	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743073	0.81[EUR][1000 genomes]
rs60681062	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62556659	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62557462	0.81[EUR][1000 genomes]
rs62557463	0.81[EUR][1000 genomes]
rs62559861	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6478038	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6478039	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7020530	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7038496	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7872669	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024207	chr9:33296368-33574892	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv972306	chr9:33486353-33510883	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv427840	chr9:33495185-33989975	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:33475000-33510400	Weak transcription	Fetal Lung	lung
2	chr9:33475000-33510600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:33478800-33510600	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:33494400-33505800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:33494800-33506000	Weak transcription	A549	lung
6	chr9:33495000-33506000	Weak transcription	Hela-S3	cervix
7	chr9:33495600-33510200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:33497000-33505800	Weak transcription	HUVEC	blood vessel
9	chr9:33498200-33510400	Weak transcription	Fetal Stomach	stomach
10	chr9:33500000-33510600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr9:33500800-33510800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:33502800-33510600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr9:33502800-33510800	Weak transcription	Left Ventricle	heart

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