Variant report

Variant	rs41316960
Chromosome Location	chr9:100041617-100041618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs1048451	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10817337	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10817384	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10817491	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10817504	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10981367	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10981434	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981444	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10981460	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10981688	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10981701	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10981784	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10981800	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10981801	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1123379	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11581	0.88[EUR][1000 genomes]
rs12115447	0.91[EUR][1000 genomes]
rs12115448	0.90[EUR][1000 genomes]
rs12377538	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12378350	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12550923	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12551740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12551818	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12552101	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12552659	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12553155	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12553213	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12553259	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12554363	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12555277	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13285567	0.84[EUR][1000 genomes]
rs13286510	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13287082	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13289134	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13289813	0.84[EUR][1000 genomes]
rs13292715	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13300328	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13301045	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13301965	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1531440	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1564048	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1564050	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16919506	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16919656	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16919661	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16919671	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16919675	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2045729	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2045730	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2045731	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2279113	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2290933	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2306090	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2306092	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2306094	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2401384	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34135027	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34183765	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34355647	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34476799	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34564795	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34609282	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34616426	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34754033	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34870571	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34905303	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34954690	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35066943	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35123877	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35534888	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35590659	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35623544	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35737497	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35778461	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35778718	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35788892	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3747490	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3747491	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3747492	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3747495	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3747498	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3747499	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3747504	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3747506	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3747507	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3747510	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3747511	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3827484	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3827485	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3994560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4742686	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4742688	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4743069	0.85[EUR][1000 genomes]
rs4743070	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4743073	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743082	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4743083	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4743085	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4743086	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60681062	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62556659	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62557460	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62557461	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62557462	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62557463	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6478038	0.81[EUR][1000 genomes]
rs6478039	0.81[EUR][1000 genomes]
rs7020530	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7038496	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7041222	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73565808	0.86[EUR][1000 genomes]
rs7872669	0.85[EUR][1000 genomes]
rs7874652	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs898869	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs898870	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9696058	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs41316960	VN1R51P	cis	Thyroid	GTEx

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100024400-100042600	Weak transcription	Fetal Heart	heart
2	chr9:100025800-100050200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:100035000-100059600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:100036400-100042600	Weak transcription	Colonic Mucosa	Colon
5	chr9:100036800-100052200	Weak transcription	Stomach Mucosa	stomach
6	chr9:100037200-100050200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:100037400-100047000	Strong transcription	Fetal Muscle Trunk	muscle
8	chr9:100037800-100046600	Strong transcription	Stomach Smooth Muscle	stomach
9	chr9:100038200-100050600	Weak transcription	Esophagus	oesophagus
10	chr9:100038400-100041800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:100038600-100042000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:100038600-100043800	Weak transcription	Psoas Muscle	Psoas
13	chr9:100038600-100044000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr9:100038600-100044400	Strong transcription	Fetal Intestine Large	intestine
15	chr9:100038600-100044600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr9:100038600-100045800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:100038600-100046800	Strong transcription	Brain Anterior Caudate	brain
18	chr9:100038600-100047600	Weak transcription	HepG2	liver
19	chr9:100038800-100044800	Strong transcription	Primary B cells from peripheral blood	blood
20	chr9:100038800-100046400	Strong transcription	Ovary	ovary
21	chr9:100038800-100047200	Strong transcription	Liver	Liver
22	chr9:100038800-100050400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:100039000-100043400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr9:100039000-100044000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr9:100039000-100046400	Strong transcription	Fetal Muscle Leg	muscle
26	chr9:100039000-100047000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:100039000-100047000	Strong transcription	Skeletal Muscle Male	skeletal muscle
28	chr9:100039000-100050600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr9:100039000-100052800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr9:100039000-100053000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:100039000-100054200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:100039200-100052800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr9:100039200-100056400	Weak transcription	Small Intestine	intestine
34	chr9:100039400-100044000	Strong transcription	Brain Germinal Matrix	brain
35	chr9:100039400-100044200	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr9:100039400-100044200	Strong transcription	Brain Hippocampus Middle	brain
37	chr9:100039400-100044400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr9:100039400-100044600	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr9:100039400-100044800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr9:100039400-100046400	Strong transcription	Left Ventricle	heart
41	chr9:100039400-100046600	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr9:100039400-100046800	Strong transcription	Primary T cells from cord blood	blood
43	chr9:100039600-100043000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr9:100039600-100043600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr9:100039600-100043800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:100039600-100044000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr9:100039600-100044200	Strong transcription	Colon Smooth Muscle	Colon
48	chr9:100039600-100046400	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr9:100039600-100046600	Strong transcription	Primary hematopoietic stem cells	blood
50	chr9:100039600-100047200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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