Variant report

Variant	rs2290933
Chromosome Location	chr9:100058875-100058876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs1048451	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10817337	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10817384	0.85[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817491	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10817504	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10981297	1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap]
rs10981367	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10981434	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981444	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10981460	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981688	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10981701	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10981784	0.94[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10981800	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10981801	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10981931	0.85[JPT][hapmap]
rs1123379	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11581	0.91[EUR][1000 genomes]
rs12115447	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12115448	0.93[EUR][1000 genomes]
rs12377538	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12378350	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12550923	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12551740	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12551818	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12552101	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12552659	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12553155	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12553213	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12553259	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12554363	1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12555277	0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13285567	0.87[EUR][1000 genomes]
rs13286510	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13287082	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13289134	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13289813	0.87[EUR][1000 genomes]
rs13292715	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13300328	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13301045	0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13301965	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1531440	0.84[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1542506	0.81[JPT][hapmap]
rs1564048	0.94[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1564050	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16919506	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16919656	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16919661	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16919671	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16919675	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2045729	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2045730	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2045731	0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2279113	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2306090	0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2306092	0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2306094	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2401384	0.94[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34135027	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34183765	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34355647	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34476799	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34564795	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34609282	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34616426	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34754033	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34870571	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34905303	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34954690	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35066943	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35123877	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35534888	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35590659	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35623544	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35737497	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35778461	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35778718	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35788892	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3747490	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3747491	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3747492	0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3747495	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3747498	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3747499	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3747504	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3747506	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3747507	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3747510	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3747511	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3827484	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3827485	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3994560	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41316960	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4742686	0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4742688	0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4742689	0.84[JPT][hapmap]
rs4743069	0.82[EUR][1000 genomes]
rs4743070	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743073	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743082	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4743083	0.94[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4743085	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4743086	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4743088	0.85[JPT][hapmap]
rs60681062	0.83[EUR][1000 genomes]
rs62556659	0.81[EUR][1000 genomes]
rs62557460	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62557461	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62557462	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62557463	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7020530	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7038496	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7041222	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73565808	0.90[EUR][1000 genomes]
rs7872669	0.82[EUR][1000 genomes]
rs7874652	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs898869	0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs898870	0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9696058	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2290933	VN1R51P	cis	Thyroid	GTEx

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100035000-100059600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:100041400-100059600	Weak transcription	Fetal Brain Male	brain
3	chr9:100046600-100069000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:100051200-100061000	Weak transcription	Colonic Mucosa	Colon
5	chr9:100051400-100059400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr9:100052200-100059000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:100053600-100059200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr9:100053600-100061400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr9:100053600-100062600	Weak transcription	Hela-S3	cervix
10	chr9:100053800-100059600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr9:100053800-100059800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:100053800-100060400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:100054200-100059400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr9:100054200-100060600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:100054400-100059400	Weak transcription	Primary B cells from cord blood	blood
16	chr9:100054400-100059800	Weak transcription	Colon Smooth Muscle	Colon
17	chr9:100054800-100059200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr9:100054800-100060000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr9:100054800-100069000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr9:100054800-100069400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:100055000-100069400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:100055800-100059200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr9:100056000-100059400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:100056000-100059600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:100056200-100059400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:100056200-100069200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr9:100056400-100060400	Weak transcription	Fetal Heart	heart
28	chr9:100056400-100062400	Weak transcription	NHDF-Ad	bronchial
29	chr9:100056400-100064000	Weak transcription	NHLF	lung
30	chr9:100056600-100059000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr9:100056600-100059000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr9:100056600-100059200	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr9:100056600-100059400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr9:100056600-100059800	Weak transcription	Fetal Lung	lung
35	chr9:100057000-100075000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr9:100057200-100059200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr9:100057200-100059400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr9:100057400-100075400	Weak transcription	Dnd41	blood
39	chr9:100057600-100059600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr9:100057600-100059600	Weak transcription	Liver	Liver
41	chr9:100057600-100059600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr9:100057600-100060400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:100057600-100069000	Weak transcription	Brain Hippocampus Middle	brain
44	chr9:100057800-100059400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr9:100057800-100059600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr9:100057800-100059600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr9:100057800-100059600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr9:100057800-100059600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:100057800-100059600	Weak transcription	Fetal Kidney	kidney
50	chr9:100057800-100059800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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