Variant report

Variant rs12555277
Chromosome Location chr9:100149333-100149334
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:100132600-100149400 Weak transcription Primary hematopoietic stem cells blood
2 chr9:100132600-100149400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
3 chr9:100139400-100149400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
4 chr9:100139800-100149400 Weak transcription Brain Substantia Nigra brain
5 chr9:100140000-100149400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
6 chr9:100140000-100149400 Weak transcription Brain Angular Gyrus brain
7 chr9:100140000-100149400 Weak transcription Ovary ovary
8 chr9:100140000-100149400 Weak transcription Right Ventricle heart
9 chr9:100140200-100149400 Weak transcription Brain Germinal Matrix brain
10 chr9:100141200-100149400 Weak transcription Left Ventricle heart
11 chr9:100141200-100150800 Weak transcription Lung lung
12 chr9:100143000-100149400 Enhancers Fetal Intestine Large intestine
13 chr9:100143200-100149400 Enhancers Fetal Intestine Small intestine
14 chr9:100144400-100150000 Enhancers Sigmoid Colon Sigmoid Colon
15 chr9:100145800-100149400 Weak transcription Gastric stomach
16 chr9:100146000-100149400 Weak transcription A549 lung
17 chr9:100148000-100149400 Enhancers Rectal Mucosa Donor 29 rectum
18 chr9:100148000-100149400 Enhancers Rectal Mucosa Donor 31 rectum
19 chr9:100148200-100149400 Flanking Active TSS HepG2 liver
20 chr9:100148200-100149800 Enhancers Esophagus oesophagus
21 chr9:100148400-100149400 Enhancers Colonic Mucosa Colon
22 chr9:100148400-100149400 Enhancers Stomach Mucosa stomach
23 chr9:100148400-100149600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
24 chr9:100148400-100151200 Enhancers Pancreas Pancrea
25 chr9:100148800-100149400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr9:100148800-100150000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr9:100148800-100150000 Enhancers Liver Liver
28 chr9:100148800-100151200 Enhancers H1 Cell Line embryonic stem cell
29 chr9:100148800-100151200 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
30 chr9:100149000-100149400 Enhancers HUES48 Cell Line embryonic stem cell
31 chr9:100149000-100149400 Bivalent Enhancer iPS-18 Cell Line embryonic stem cell
32 chr9:100149000-100149400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
33 chr9:100149000-100149400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
34 chr9:100149000-100149600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr9:100149000-100150800 Enhancers GM12878-XiMat blood
36 chr9:100149200-100149400 Bivalent Enhancer ES-I3 Cell Line embryonic stem cell
37 chr9:100149200-100149400 Active TSS HUES6 Cell Line embryonic stem cell
38 chr9:100149200-100149400 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
39 chr9:100149200-100149400 Bivalent Enhancer Primary T cells fromperipheralblood blood
40 chr9:100149200-100149400 Enhancers Primary T helper naive cells fromperipheralblood blood
41 chr9:100149200-100149400 Enhancers Primary T helper 17 cells PMA-I stimulated --
42 chr9:100149200-100149400 Bivalent Enhancer Primary T helper cells fromperipheralblood blood
43 chr9:100149200-100149400 Enhancers Cortex derived primary cultured neurospheres brain
44 chr9:100149200-100149400 Bivalent Enhancer Brain Hippocampus Middle brain
45 chr9:100149200-100149400 Enhancers Brain Inferior Temporal Lobe brain
46 chr9:100149200-100149600 Flanking Active TSS Brain Cingulate Gyrus brain
47 chr9:100149200-100149600 Bivalent Enhancer Fetal Stomach stomach
48 chr9:100149200-100150000 Enhancers ES-WA7 Cell Line embryonic stem cell
49 chr9:100149200-100150000 Flanking Active TSS Duodenum Mucosa Duodenum
50 chr9:100149200-100150000 Bivalent Enhancer Fetal Muscle Leg muscle

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