Variant report

Variant	rs10981688
Chromosome Location	chr9:100101541-100101542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 115 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs1048451	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10817337	0.82[EUR][1000 genomes]
rs10817384	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10817491	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10817504	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10981367	0.83[EUR][1000 genomes]
rs10981434	0.89[ASN][1000 genomes]
rs10981444	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10981460	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10981701	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10981784	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981800	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981801	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1123379	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11581	0.94[EUR][1000 genomes]
rs12115447	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12115448	0.96[EUR][1000 genomes]
rs12377538	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12378350	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12550923	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12551740	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12551818	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12552101	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12552659	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12553155	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12553213	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12553259	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12554363	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12555277	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13285567	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13286510	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13287082	0.81[EUR][1000 genomes]
rs13289134	0.83[EUR][1000 genomes]
rs13289813	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13292715	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13300328	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13301045	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13301965	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1531440	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1564048	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1564050	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16919506	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16919656	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16919661	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16919671	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16919675	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2045729	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2045730	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2045731	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2279113	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2290933	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2306090	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2306092	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2306094	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2401384	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34135027	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34183765	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34355647	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34476799	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34564795	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34609282	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34616426	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34754033	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34870571	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34905303	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34954690	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35066943	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35123877	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35534888	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35590659	0.83[EUR][1000 genomes]
rs35623544	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35737497	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35778461	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35778718	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35788892	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3747490	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3747491	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3747492	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3747495	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3747498	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3747499	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3747504	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3747506	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3747507	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3747510	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3747511	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3827484	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3827485	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3994560	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41316960	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4742686	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4742688	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743069	0.81[EUR][1000 genomes]
rs4743070	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4743073	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743082	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743083	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743085	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743086	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60681062	0.82[EUR][1000 genomes]
rs62556659	0.81[EUR][1000 genomes]
rs62557460	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62557461	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62557462	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62557463	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7020530	0.82[EUR][1000 genomes]
rs7038496	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7041222	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73565808	0.94[EUR][1000 genomes]
rs7872669	0.81[EUR][1000 genomes]
rs7874652	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs898869	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs898870	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9696058	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762823	chr9:100083872-100105782	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10981688	VN1R51P	cis	Thyroid	GTEx

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100070000-100131400	Weak transcription	Fetal Kidney	kidney
2	chr9:100077000-100106400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr9:100077000-100140800	Weak transcription	Fetal Brain Male	brain
4	chr9:100080400-100126400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr9:100083800-100124000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:100086400-100110400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:100086600-100121600	Weak transcription	Right Ventricle	heart
8	chr9:100086600-100132000	Weak transcription	Thymus	Thymus
9	chr9:100086800-100104000	Weak transcription	Dnd41	blood
10	chr9:100088000-100126200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr9:100088200-100127000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr9:100088600-100128600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr9:100088600-100132800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr9:100088800-100103800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:100088800-100121400	Weak transcription	Gastric	stomach
16	chr9:100089000-100104000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:100089000-100104000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:100089200-100102800	Weak transcription	Fetal Intestine Small	intestine
19	chr9:100089200-100128200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr9:100090600-100104200	Weak transcription	Liver	Liver
21	chr9:100090600-100119000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:100090600-100133800	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr9:100091000-100102600	Weak transcription	Lung	lung
24	chr9:100091200-100106400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr9:100091600-100102800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr9:100091600-100103000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr9:100091600-100103800	Weak transcription	Spleen	Spleen
28	chr9:100091600-100106400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr9:100091600-100149200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr9:100092000-100105400	Weak transcription	Primary T cells from cord blood	blood
31	chr9:100093000-100102800	Weak transcription	Fetal Stomach	stomach
32	chr9:100093000-100104000	Weak transcription	Colon Smooth Muscle	Colon
33	chr9:100093000-100105600	Weak transcription	Fetal Lung	lung
34	chr9:100093000-100111000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr9:100093000-100117000	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr9:100093600-100102800	Weak transcription	Fetal Muscle Leg	muscle
37	chr9:100093600-100103800	Weak transcription	Aorta	Aorta
38	chr9:100093600-100106400	Weak transcription	Left Ventricle	heart
39	chr9:100093600-100122400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr9:100093800-100104000	Weak transcription	Ovary	ovary
41	chr9:100094600-100109400	Weak transcription	Brain Angular Gyrus	brain
42	chr9:100095200-100102800	Weak transcription	Brain Germinal Matrix	brain
43	chr9:100095200-100105400	Weak transcription	Brain Anterior Caudate	brain
44	chr9:100095600-100116800	Weak transcription	Brain Hippocampus Middle	brain
45	chr9:100095800-100109200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr9:100096800-100109400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr9:100097200-100104000	Weak transcription	Adipose Nuclei	Adipose
48	chr9:100097400-100102800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr9:100097400-100104800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr9:100097800-100101800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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