Variant report

Variant	rs1123379
Chromosome Location	chr9:100128644-100128645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr9:100128171-100129071	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:100126892..100129618-chr9:100133900..100135494,2	MCF-7	breast:
2	chr9:100127196..100129265-chr9:100394272..100396018,2	MCF-7	breast:
3	chr9:100125915..100128768-chr9:100134081..100137040,2	MCF-7	breast:
4	chr9:99180107..99181680-chr9:100127262..100129122,2	K562	blood:

Variant related genes	Relation type
MIR1302-8	TF binding region
CCDC180	TF binding region
ENSG00000136937	Chromatin interaction
ENSG00000165244	Chromatin interaction
ENSG00000197816	Chromatin interaction
ENSG00000136925	Chromatin interaction

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs1048451	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10521029	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10817384	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10817491	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10817504	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10981367	0.85[YRI][hapmap]
rs10981434	0.82[EUR][1000 genomes]
rs10981444	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981460	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10981688	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981701	0.90[AMR][1000 genomes]
rs10981784	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981800	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10981801	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11581	1.00[EUR][1000 genomes]
rs12115447	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12115448	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12377538	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12378350	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12550923	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12551740	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12551818	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12552101	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12552659	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12553155	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12553213	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12553259	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12554363	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12555277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13285567	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13286510	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13289813	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13292715	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13300328	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13301045	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13301965	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1531440	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1564048	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564050	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16919506	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16919656	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16919661	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16919671	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16919675	0.82[JPT][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2045729	0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2045730	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2045731	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2279113	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2290933	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2306090	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2306092	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2306094	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2401384	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34135027	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34183765	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34355647	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34476799	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34564795	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34609282	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34616426	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34754033	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34870571	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34905303	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34954690	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35066943	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35123877	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35534888	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35623544	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35737497	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35778461	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35778718	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35788892	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3747490	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3747491	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3747492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3747495	0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3747498	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3747499	0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3747504	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3747506	0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3747507	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3747510	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3747511	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3827484	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3827485	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3994560	0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41316960	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4742686	0.95[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4742688	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4743069	0.85[EUR][1000 genomes]
rs4743070	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4743073	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4743082	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743085	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4743086	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60681062	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62557460	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62557461	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62557462	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62557463	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62559861	0.83[EUR][1000 genomes]
rs6478038	0.84[EUR][1000 genomes]
rs6478039	0.84[EUR][1000 genomes]
rs7020530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7038496	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7041222	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73565808	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7859665	0.82[JPT][hapmap]
rs7872669	0.85[EUR][1000 genomes]
rs7874652	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs898869	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs898870	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9696058	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100070000-100131400	Weak transcription	Fetal Kidney	kidney
2	chr9:100077000-100140800	Weak transcription	Fetal Brain Male	brain
3	chr9:100086600-100132000	Weak transcription	Thymus	Thymus
4	chr9:100088600-100132800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr9:100090600-100133800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr9:100091600-100149200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr9:100099000-100132200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:100104400-100142000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:100106800-100143200	Weak transcription	Liver	Liver
10	chr9:100107000-100131400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:100107200-100130200	Weak transcription	Fetal Lung	lung
12	chr9:100107200-100138400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr9:100108000-100148200	Weak transcription	Esophagus	oesophagus
14	chr9:100110200-100132200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr9:100115400-100144600	Weak transcription	Hela-S3	cervix
16	chr9:100115600-100139200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr9:100116200-100130800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:100116400-100130800	Strong transcription	Fetal Stomach	stomach
19	chr9:100116600-100129200	Strong transcription	Stomach Smooth Muscle	stomach
20	chr9:100117400-100132400	Weak transcription	Fetal Intestine Large	intestine
21	chr9:100117400-100145000	Weak transcription	Colon Smooth Muscle	Colon
22	chr9:100117600-100130000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr9:100117600-100146400	Weak transcription	Small Intestine	intestine
24	chr9:100118200-100132400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr9:100118200-100141600	Weak transcription	Primary T cells from cord blood	blood
26	chr9:100119000-100130800	Strong transcription	Fetal Muscle Trunk	muscle
27	chr9:100120000-100129200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:100120000-100130400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr9:100120000-100137800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr9:100121000-100129200	Strong transcription	Fetal Muscle Leg	muscle
31	chr9:100121200-100129200	Strong transcription	Skeletal Muscle Male	skeletal muscle
32	chr9:100121400-100129200	Strong transcription	Brain Inferior Temporal Lobe	brain
33	chr9:100121800-100128800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr9:100121800-100137800	Weak transcription	Gastric	stomach
35	chr9:100124200-100130400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr9:100124600-100128800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr9:100125000-100129600	Enhancers	HepG2	liver
38	chr9:100125400-100132200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:100125800-100130000	Weak transcription	Dnd41	blood
40	chr9:100126400-100131400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr9:100126400-100137800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr9:100126600-100128800	Enhancers	GM12878-XiMat	blood
43	chr9:100126600-100141600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr9:100126600-100148400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr9:100127000-100129200	Strong transcription	Brain Anterior Caudate	brain
46	chr9:100127000-100129200	Enhancers	Duodenum Mucosa	Duodenum
47	chr9:100127000-100148600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr9:100127400-100129000	Strong transcription	Brain Cingulate Gyrus	brain
49	chr9:100127600-100129000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr9:100127600-100129000	Strong transcription	HUES6 Cell Line	embryonic stem cell

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