Variant report

Variant	rs1048451
Chromosome Location	chr9:100059541-100059542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100052153..100055011-chr9:100058924..100061369,2	MCF-7	breast:
2	chr9:100059268..100061469-chr9:100065674..100068294,2	MCF-7	breast:
3	chr9:100053928..100055918-chr9:100059325..100061044,2	K562	blood:

Variant related genes	Relation type
ENSG00000255036	Chromatin interaction

Extended variants
information (count: 119 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10521029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs10817337	0.80[EUR][1000 genomes]
rs10817384	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10817491	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10817504	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10981297	0.94[CEU][hapmap]
rs10981367	1.00[CEU][hapmap]
rs10981434	0.84[EUR][1000 genomes]
rs10981444	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10981460	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10981688	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10981784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10981800	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10981801	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1123379	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11581	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12115447	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12115448	0.91[EUR][1000 genomes]
rs12377538	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12378350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12550923	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12551740	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12551818	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12552101	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12552659	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12553155	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12553213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12553259	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12554363	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12555277	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13285567	0.87[CEU][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13286510	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13287082	1.00[CEU][hapmap]
rs13289134	1.00[CEU][hapmap]
rs13289813	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13292715	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13300328	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13301045	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13301965	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1531440	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1564048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1564050	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16919506	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16919656	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16919661	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16919671	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16919675	0.89[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1986462	0.94[CEU][hapmap]
rs2045729	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2045730	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2045731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2279113	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2290933	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2306090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2306092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2306094	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2401384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34135027	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34183765	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34355647	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34476799	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34564795	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34609282	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34616426	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34754033	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34870571	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34905303	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34954690	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35066943	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35123877	0.88[EUR][1000 genomes]
rs35534888	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35623544	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35737497	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35778461	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35778718	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35788892	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3747490	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3747491	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3747492	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3747495	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3747498	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3747499	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3747504	1.00[CEU][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3747506	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3747507	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3747510	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3747511	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3827484	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3827485	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3994560	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4128763	1.00[CEU][hapmap]
rs41316960	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4742686	0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4742688	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4743069	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4743070	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4743073	0.94[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743085	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4743086	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60681062	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62557460	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62557461	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62557462	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62557463	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62559861	0.82[EUR][1000 genomes]
rs6478038	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6478039	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7020530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7038496	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7041222	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73565808	0.88[EUR][1000 genomes]
rs7859665	0.82[JPT][hapmap]
rs7872669	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7874652	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs898869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs898870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9696058	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1048451	VN1R51P	cis	Thyroid	GTEx

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100035000-100059600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:100041400-100059600	Weak transcription	Fetal Brain Male	brain
3	chr9:100046600-100069000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:100051200-100061000	Weak transcription	Colonic Mucosa	Colon
5	chr9:100053600-100061400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:100053600-100062600	Weak transcription	Hela-S3	cervix
7	chr9:100053800-100059600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:100053800-100059800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:100053800-100060400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:100054200-100060600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:100054400-100059800	Weak transcription	Colon Smooth Muscle	Colon
12	chr9:100054800-100060000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr9:100054800-100069000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:100054800-100069400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:100055000-100069400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:100056000-100059600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:100056200-100069200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:100056400-100060400	Weak transcription	Fetal Heart	heart
19	chr9:100056400-100062400	Weak transcription	NHDF-Ad	bronchial
20	chr9:100056400-100064000	Weak transcription	NHLF	lung
21	chr9:100056600-100059800	Weak transcription	Fetal Lung	lung
22	chr9:100057000-100075000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr9:100057400-100075400	Weak transcription	Dnd41	blood
24	chr9:100057600-100059600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:100057600-100059600	Weak transcription	Liver	Liver
26	chr9:100057600-100059600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr9:100057600-100060400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr9:100057600-100069000	Weak transcription	Brain Hippocampus Middle	brain
29	chr9:100057800-100059600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:100057800-100059600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr9:100057800-100059600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr9:100057800-100059600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr9:100057800-100059600	Weak transcription	Fetal Kidney	kidney
34	chr9:100057800-100059800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:100057800-100060000	Weak transcription	Adipose Nuclei	Adipose
36	chr9:100057800-100060200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr9:100057800-100069000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr9:100058000-100059600	Weak transcription	Primary T cells from cord blood	blood
39	chr9:100058000-100059800	Weak transcription	Brain Angular Gyrus	brain
40	chr9:100058000-100060200	Weak transcription	Right Atrium	heart
41	chr9:100058000-100061800	Weak transcription	Brain Substantia Nigra	brain
42	chr9:100058000-100063800	Weak transcription	Thymus	Thymus
43	chr9:100058000-100068600	Weak transcription	Brain Anterior Caudate	brain
44	chr9:100058000-100068800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr9:100058000-100069200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr9:100058200-100059600	Weak transcription	Brain Germinal Matrix	brain
47	chr9:100058200-100059800	Weak transcription	Ovary	ovary
48	chr9:100058200-100059800	Weak transcription	Pancreas	Pancrea
49	chr9:100058200-100060200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr9:100058200-100061000	Weak transcription	Left Ventricle	heart

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