Variant report

Variant	rs3747507
Chromosome Location	chr9:100071728-100071729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100071352..100073895-chr9:100079850..100081811,2	K562	blood:
2	chr9:100066231..100068104-chr9:100070294..100072563,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TDRD7-1	chr9:100071696-100071775	NONHSAT133495

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs1048451	1.00[CEU][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10521029	0.86[ASW][hapmap];1.00[CEU][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs10817337	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10817384	0.85[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817491	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10817504	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10981297	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap]
rs10981367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs10981434	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10981444	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10981460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10981688	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10981701	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10981784	1.00[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10981800	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10981801	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10981931	0.85[JPT][hapmap]
rs1123379	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11581	1.00[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs12115447	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12115448	0.93[EUR][1000 genomes]
rs12377538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12378350	1.00[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12550923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12551740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12551818	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12552101	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12552659	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12553155	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12553213	0.86[ASW][hapmap];1.00[CEU][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12553259	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12554363	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12555277	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13285567	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13286510	1.00[CEU][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13287082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs13289134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs13289813	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13292715	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13300328	1.00[CEU][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13301045	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13301965	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1531440	0.94[CEU][hapmap];0.84[CHB][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1542506	0.80[JPT][hapmap]
rs1564048	1.00[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1564050	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16919506	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16919656	0.90[EUR][1000 genomes]
rs16919661	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16919671	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16919675	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1986462	0.94[CEU][hapmap]
rs2045729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2045730	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2045731	1.00[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2279113	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2290933	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306090	1.00[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2306092	1.00[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2306094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2401384	1.00[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34135027	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34183765	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34355647	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34476799	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34564795	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34609282	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34616426	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34754033	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34870571	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34905303	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34954690	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35066943	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35123877	0.90[EUR][1000 genomes]
rs35534888	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35590659	0.83[EUR][1000 genomes]
rs35623544	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35737497	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35778461	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35778718	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35788892	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3747490	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3747491	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3747492	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3747495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3747498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3747499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3747504	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3747506	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3747510	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3747511	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3827484	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3827485	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3994560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4128763	1.00[CEU][hapmap]
rs41316960	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4742686	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4742688	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4742689	0.83[JPT][hapmap]
rs4743069	0.82[EUR][1000 genomes]
rs4743070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743082	1.00[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4743083	1.00[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4743085	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4743086	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4743088	0.85[JPT][hapmap]
rs60681062	0.83[EUR][1000 genomes]
rs62556659	0.81[EUR][1000 genomes]
rs62557460	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62557461	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62557462	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62557463	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7020530	1.00[CEU][hapmap];0.96[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7038496	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7041222	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73565808	0.90[EUR][1000 genomes]
rs7872669	0.82[EUR][1000 genomes]
rs7874652	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs898869	1.00[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs898870	1.00[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9696058	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100057000-100075000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr9:100057400-100075400	Weak transcription	Dnd41	blood
3	chr9:100068800-100074200	Weak transcription	Thymus	Thymus
4	chr9:100069200-100071800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr9:100069400-100092800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:100069600-100071800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:100069600-100094400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr9:100069800-100075400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:100069800-100076600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:100069800-100077400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:100069800-100086400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:100070000-100071800	Weak transcription	Aorta	Aorta
13	chr9:100070000-100072000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr9:100070000-100072200	Weak transcription	Spleen	Spleen
15	chr9:100070000-100074400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:100070000-100075400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr9:100070000-100076000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr9:100070000-100091400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr9:100070000-100093800	Weak transcription	Psoas Muscle	Psoas
20	chr9:100070000-100098000	Weak transcription	Small Intestine	intestine
21	chr9:100070000-100100200	Weak transcription	Fetal Heart	heart
22	chr9:100070000-100131400	Weak transcription	Fetal Kidney	kidney
23	chr9:100070200-100071800	Weak transcription	Left Ventricle	heart
24	chr9:100070200-100072000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr9:100070200-100073000	Weak transcription	Brain Hippocampus Middle	brain
26	chr9:100070200-100073800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr9:100070200-100076800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr9:100070200-100092600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr9:100070200-100095000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr9:100070400-100071800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr9:100070400-100071800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr9:100070400-100071800	Weak transcription	Right Ventricle	heart
33	chr9:100070400-100072000	Weak transcription	Primary B cells from cord blood	blood
34	chr9:100070400-100072000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr9:100070400-100072000	Enhancers	Placenta	Placenta
36	chr9:100070400-100072400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr9:100070400-100072600	Weak transcription	Primary T cells from cord blood	blood
38	chr9:100070400-100072800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr9:100070400-100073200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr9:100070400-100073400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr9:100070400-100073600	Weak transcription	Pancreas	Pancrea
42	chr9:100070400-100073800	Weak transcription	Gastric	stomach
43	chr9:100070400-100074000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr9:100070400-100074000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr9:100070400-100074200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr9:100070400-100074200	Weak transcription	Primary B cells from peripheral blood	blood
47	chr9:100070400-100074200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr9:100070400-100075200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr9:100070400-100075600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr9:100070400-100075600	Weak transcription	Fetal Brain Male	brain

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