Variant report

Variant	rs10981434
Chromosome Location	chr9:100033681-100033682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1048451	0.84[EUR][1000 genomes]
rs10817337	0.83[ASN][1000 genomes]
rs10817384	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10817504	0.81[EUR][1000 genomes]
rs10981444	0.87[EUR][1000 genomes]
rs10981460	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10981688	0.89[ASN][1000 genomes]
rs10981701	0.88[ASN][1000 genomes]
rs10981784	0.82[EUR][1000 genomes]
rs10981800	0.82[EUR][1000 genomes]
rs10981801	0.82[EUR][1000 genomes]
rs1123379	0.82[EUR][1000 genomes]
rs11581	0.82[EUR][1000 genomes]
rs12377538	0.89[ASN][1000 genomes]
rs12378350	0.84[EUR][1000 genomes]
rs12550923	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12551740	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12551818	0.82[EUR][1000 genomes]
rs12552659	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12553155	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12553213	0.83[EUR][1000 genomes]
rs12554363	0.82[EUR][1000 genomes]
rs12555277	0.82[EUR][1000 genomes]
rs13286510	0.83[EUR][1000 genomes]
rs13292715	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13300328	0.83[EUR][1000 genomes]
rs13301045	0.82[EUR][1000 genomes]
rs13301965	0.84[ASN][1000 genomes]
rs1564048	0.82[EUR][1000 genomes]
rs1564050	0.82[EUR][1000 genomes]
rs16919506	0.82[EUR][1000 genomes]
rs2045729	0.87[ASN][1000 genomes]
rs2045730	0.82[EUR][1000 genomes]
rs2045731	0.82[EUR][1000 genomes]
rs2279113	0.84[ASN][1000 genomes]
rs2290933	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2306090	0.82[EUR][1000 genomes]
rs2306092	0.82[EUR][1000 genomes]
rs2306094	0.89[ASN][1000 genomes]
rs2401384	0.82[EUR][1000 genomes]
rs34135027	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34355647	0.91[ASN][1000 genomes]
rs34476799	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34609282	0.82[EUR][1000 genomes]
rs34616426	0.84[ASN][1000 genomes]
rs34754033	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34905303	0.82[EUR][1000 genomes]
rs34954690	0.83[EUR][1000 genomes]
rs35066943	0.82[EUR][1000 genomes]
rs35534888	0.82[EUR][1000 genomes]
rs35623544	0.82[EUR][1000 genomes]
rs35778461	0.81[EUR][1000 genomes]
rs35778718	0.82[EUR][1000 genomes]
rs35788892	0.82[EUR][1000 genomes]
rs3747490	0.82[EUR][1000 genomes]
rs3747491	0.82[EUR][1000 genomes]
rs3747492	0.82[EUR][1000 genomes]
rs3747495	0.89[ASN][1000 genomes]
rs3747498	0.90[ASN][1000 genomes]
rs3747499	0.90[ASN][1000 genomes]
rs3747504	0.91[ASN][1000 genomes]
rs3747506	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3747507	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3747510	0.82[EUR][1000 genomes]
rs3827484	0.82[EUR][1000 genomes]
rs3994560	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41316960	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4742686	0.83[EUR][1000 genomes]
rs4742688	0.82[EUR][1000 genomes]
rs4743069	0.84[EUR][1000 genomes]
rs4743070	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4743073	0.91[ASN][1000 genomes]
rs4743082	0.82[EUR][1000 genomes]
rs4743083	0.82[EUR][1000 genomes]
rs4743085	0.82[EUR][1000 genomes]
rs4743086	0.82[EUR][1000 genomes]
rs60681062	0.85[EUR][1000 genomes]
rs7020530	0.84[EUR][1000 genomes]
rs7038496	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7041222	0.82[EUR][1000 genomes]
rs7872669	0.84[EUR][1000 genomes]
rs7874652	0.82[EUR][1000 genomes]
rs898869	0.82[EUR][1000 genomes]
rs9696058	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv972791	chr9:100007482-100037888	Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10981434	VN1R51P	cis	Thyroid	GTEx
rs10981434	RP11-520B13.4	cis	Thyroid	GTEx

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100001200-100039400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:100001600-100037400	Weak transcription	Primary T cells from cord blood	blood
3	chr9:100002000-100037400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:100002000-100037800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:100002000-100038600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr9:100002000-100038600	Weak transcription	Fetal Intestine Large	intestine
7	chr9:100002000-100038600	Weak transcription	Fetal Intestine Small	intestine
8	chr9:100002000-100038800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr9:100002000-100038800	Weak transcription	Ovary	ovary
10	chr9:100002000-100038800	Weak transcription	Right Ventricle	heart
11	chr9:100002000-100039000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr9:100002000-100039600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:100002000-100039600	Weak transcription	Adipose Nuclei	Adipose
14	chr9:100002000-100039600	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:100002000-100039600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:100002000-100040400	Weak transcription	Spleen	Spleen
17	chr9:100002200-100038800	Weak transcription	Liver	Liver
18	chr9:100002200-100039400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr9:100002200-100039400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:100002400-100037400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr9:100010600-100039400	Weak transcription	Brain Hippocampus Middle	brain
22	chr9:100011600-100038800	Weak transcription	Fetal Stomach	stomach
23	chr9:100011600-100039600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr9:100013000-100040400	Weak transcription	Brain Substantia Nigra	brain
25	chr9:100022600-100039000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:100023400-100039600	Weak transcription	Fetal Lung	lung
27	chr9:100024400-100040600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:100024400-100042600	Weak transcription	Fetal Heart	heart
29	chr9:100025000-100039400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr9:100025800-100038600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr9:100025800-100050200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:100028600-100039000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr9:100031200-100039800	Weak transcription	Lung	lung
34	chr9:100032400-100038800	Weak transcription	Aorta	Aorta
35	chr9:100033200-100034000	Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr9:100033400-100033800	Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr9:100033400-100034400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr9:100033400-100035000	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr9:100033400-100035000	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr9:100033600-100033800	Enhancers	K562	blood
41	chr9:100033600-100034000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr9:100033600-100034200	Active TSS	ES-I3 Cell Line	embryonic stem cell

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