Variant report

Variant	rs626404
Chromosome Location	chr6:36530255-36530256
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1744648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1744661	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1794623	1.00[AMR][1000 genomes]
rs1794624	0.81[AFR][1000 genomes]
rs1794626	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs582922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs594369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs594980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs594999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs596879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs596907	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs600382	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs600461	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs605925	1.00[AMR][1000 genomes]
rs606601	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs606781	1.00[AMR][1000 genomes]
rs607009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs607735	1.00[AMR][1000 genomes]
rs609612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs611583	1.00[AMR][1000 genomes]
rs611661	1.00[AMR][1000 genomes]
rs612098	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs614001	1.00[AMR][1000 genomes]
rs623413	1.00[AMR][1000 genomes]
rs624670	1.00[AMR][1000 genomes]
rs626511	1.00[AMR][1000 genomes]
rs628564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs629469	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs644634	1.00[AMR][1000 genomes]
rs652896	1.00[AMR][1000 genomes]
rs653077	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs653864	1.00[AFR][1000 genomes]
rs655573	1.00[AMR][1000 genomes]
rs656049	1.00[AMR][1000 genomes]
rs659189	1.00[AMR][1000 genomes]
rs667632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs668023	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs668460	1.00[AMR][1000 genomes]
rs668553	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs669779	1.00[AMR][1000 genomes]
rs674713	1.00[AMR][1000 genomes]
rs675619	1.00[AMR][1000 genomes]
rs682937	1.00[AMR][1000 genomes]
rs684354	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs684482	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs685109	1.00[AMR][1000 genomes]
rs685261	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs685997	1.00[AMR][1000 genomes]
rs686057	1.00[AMR][1000 genomes]
rs686478	1.00[AMR][1000 genomes]
rs688126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470315	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470318	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36525200-36531400	Weak transcription	HSMMtube	muscle
2	chr6:36525800-36540200	Weak transcription	Placenta	Placenta
3	chr6:36527000-36531400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:36527600-36531200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:36529600-36530400	Enhancers	Fetal Intestine Large	intestine
6	chr6:36529600-36531800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:36529600-36531800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:36529600-36532000	Enhancers	Fetal Intestine Small	intestine
9	chr6:36529800-36531600	Bivalent Enhancer	HepG2	liver
10	chr6:36529800-36531800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:36530000-36530400	Enhancers	Fetal Muscle Trunk	muscle
12	chr6:36530000-36531800	Enhancers	Osteobl	bone
13	chr6:36530200-36530400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:36530200-36531800	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links