Variant report

Variant	rs6424998
Chromosome Location	chr1:185570119-185570120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185562994..185565799-chr1:185568265..185570265,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10047200	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12043649	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1321986	0.89[EUR][1000 genomes]
rs1321987	0.92[CEU][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes]
rs1321988	0.89[EUR][1000 genomes]
rs1407270	0.87[EUR][1000 genomes]
rs1407272	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1553486	0.86[EUR][1000 genomes]
rs1553487	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs168004	0.88[ASN][1000 genomes]
rs16824258	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs186732	0.90[ASN][1000 genomes]
rs193088	0.95[ASN][1000 genomes]
rs2383328	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2383329	0.89[EUR][1000 genomes]
rs2756209	0.89[ASN][1000 genomes]
rs2842591	0.90[ASN][1000 genomes]
rs333704	1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs333705	0.88[ASN][1000 genomes]
rs333706	0.85[ASN][1000 genomes]
rs333708	0.88[ASN][1000 genomes]
rs333710	0.95[ASN][1000 genomes]
rs333711	0.92[ASN][1000 genomes]
rs333712	0.92[ASN][1000 genomes]
rs333713	0.92[ASN][1000 genomes]
rs333718	0.90[ASN][1000 genomes]
rs333724	0.96[ASN][1000 genomes]
rs333726	0.96[ASN][1000 genomes]
rs333728	0.96[ASN][1000 genomes]
rs4233122	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233123	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4233124	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4344284	0.92[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4393107	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4424453	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4424454	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4427366	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4430287	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4430288	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4523487	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4651277	0.84[EUR][1000 genomes]
rs486969	0.93[ASN][1000 genomes]
rs492436	0.89[ASN][1000 genomes]
rs495416	0.81[ASN][1000 genomes]
rs5001199	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs506429	0.94[ASN][1000 genomes]
rs507076	0.93[ASN][1000 genomes]
rs516040	0.87[CHB][hapmap]
rs518472	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs531472	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs545105	0.95[ASN][1000 genomes]
rs553452	0.81[ASN][1000 genomes]
rs561469	0.85[ASN][1000 genomes]
rs567021	0.89[ASN][1000 genomes]
rs567846	0.89[ASN][1000 genomes]
rs56918739	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6424996	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6424997	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6665025	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7532978	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs905700	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs905701	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs971224	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185569800-185570200	Enhancers	Fetal Heart	heart
2	chr1:185569800-185575200	Enhancers	Primary B cells from peripheral blood	blood
3	chr1:185570000-185570200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:185570000-185570200	Enhancers	Spleen	Spleen
5	chr1:185570000-185571000	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links