The 2.0 version of rSNPBase

Variant report

Variant rs553452
Chromosome Location chr1:185531296-185531297
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:185521000-185533800 Weak transcription Placenta Placenta
2 chr1:185525400-185536000 Weak transcription Stomach Mucosa stomach
3 chr1:185526400-185533800 Weak transcription Osteobl bone
4 chr1:185527800-185532400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
5 chr1:185528000-185536000 Weak transcription Fetal Kidney kidney
6 chr1:185528200-185531800 Enhancers Primary T regulatory cells fromperipheralblood blood
7 chr1:185528400-185531800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
8 chr1:185528400-185532400 Enhancers Primary T helper cells fromperipheralblood blood
9 chr1:185528600-185531400 Enhancers Primary hematopoietic stem cells short term culture blood
10 chr1:185528600-185533000 Enhancers Primary T cells from cord blood blood
11 chr1:185528600-185539800 Enhancers Primary T helper 17 cells PMA-I stimulated --
12 chr1:185528800-185531600 Enhancers Fetal Thymus thymus
13 chr1:185528800-185531800 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
14 chr1:185528800-185531800 Enhancers Primary T killer naive cells fromperipheralblood blood
15 chr1:185528800-185531800 Enhancers Thymus Thymus
16 chr1:185528800-185532800 Enhancers Primary T helper cells PMA-I stimulated --
17 chr1:185529200-185535400 Weak transcription Small Intestine intestine
18 chr1:185529400-185531400 Enhancers Primary neutrophils fromperipheralblood blood
19 chr1:185529400-185533200 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr1:185529400-185533800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr1:185529400-185534000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr1:185529400-185534000 Weak transcription Fetal Heart heart
23 chr1:185529400-185543000 Weak transcription Pancreas Pancrea
24 chr1:185529600-185535800 Weak transcription Fetal Intestine Large intestine
25 chr1:185530400-185535000 Weak transcription Primary B cells from cord blood blood
26 chr1:185530400-185535400 Weak transcription Duodenum Mucosa Duodenum
27 chr1:185530400-185536000 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr1:185530600-185531400 Enhancers NHEK skin
29 chr1:185530600-185531600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr1:185530600-185531800 Enhancers Placenta Amnion Placenta Amnion
31 chr1:185530800-185531800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr1:185530800-185533000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr1:185530800-185533400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
34 chr1:185530800-185535800 Weak transcription Monocytes-CD14+_RO01746 blood
35 chr1:185530800-185536600 Weak transcription Left Ventricle heart
36 chr1:185530800-185544000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr1:185531000-185531400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr1:185531000-185532000 Enhancers Primary T helper naive cells fromperipheralblood blood
39 chr1:185531000-185534600 Weak transcription Primary B cells from peripheral blood blood
40 chr1:185531000-185535200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
41 chr1:185531000-185535800 Weak transcription Primary monocytes fromperipheralblood blood
42 chr1:185531200-185531400 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
43 chr1:185531200-185531600 Enhancers Primary T killer memory cells from peripheral blood blood
44 chr1:185531200-185532200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:185531200-185532800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
46 chr1:185531200-185533000 Weak transcription Primary T cells fromperipheralblood blood
47 chr1:185531200-185533000 Weak transcription HMEC breast
48 chr1:185531200-185534400 Weak transcription Primary hematopoietic stem cells blood
49 chr1:185531200-185536000 Weak transcription Primary mononuclear cells fromperipheralblood Blood

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Last update: Aug 31, 2015