Variant report

Variant	rs492436
Chromosome Location	chr1:185558118-185558119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10047200	0.80[ASN][1000 genomes]
rs12043649	0.80[ASN][1000 genomes]
rs1321986	0.82[ASN][1000 genomes]
rs1321987	0.82[ASN][1000 genomes]
rs1321988	0.82[ASN][1000 genomes]
rs1407272	0.80[ASN][1000 genomes]
rs168004	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16824258	0.80[ASN][1000 genomes]
rs170788	0.83[AMR][1000 genomes]
rs186732	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs193088	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2208600	0.83[AMR][1000 genomes]
rs2383328	0.80[ASN][1000 genomes]
rs2756198	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2756204	0.83[AMR][1000 genomes]
rs2756205	0.83[AMR][1000 genomes]
rs2756207	0.83[AMR][1000 genomes]
rs2756209	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2756212	0.82[EUR][1000 genomes]
rs2821436	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2842580	0.83[AMR][1000 genomes]
rs2842582	0.83[AMR][1000 genomes]
rs2842591	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs333701	0.83[AMR][1000 genomes]
rs333702	0.83[AMR][1000 genomes]
rs333703	0.83[AMR][1000 genomes]
rs333704	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs333705	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs333706	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs333707	0.83[ASN][1000 genomes]
rs333708	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs333709	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs333710	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs333711	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs333712	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs333713	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs333716	0.83[AMR][1000 genomes]
rs333717	0.83[AMR][1000 genomes]
rs333718	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs333719	0.83[AMR][1000 genomes]
rs333720	0.83[AMR][1000 genomes]
rs333721	0.83[AMR][1000 genomes]
rs333724	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs333726	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs333727	0.83[AMR][1000 genomes]
rs333728	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4233122	0.89[ASN][1000 genomes]
rs4233124	0.80[ASN][1000 genomes]
rs4393107	0.80[ASN][1000 genomes]
rs4424453	0.80[ASN][1000 genomes]
rs4424454	0.80[ASN][1000 genomes]
rs4430287	0.80[ASN][1000 genomes]
rs4430288	0.80[ASN][1000 genomes]
rs4523487	0.80[ASN][1000 genomes]
rs479511	0.83[AMR][1000 genomes]
rs486969	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs494700	0.83[EUR][1000 genomes]
rs495416	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs496413	0.83[AMR][1000 genomes]
rs498961	0.83[AMR][1000 genomes]
rs5001199	0.80[ASN][1000 genomes]
rs500228	0.80[AMR][1000 genomes]
rs506429	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs507076	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs516040	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs518472	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs521481	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs522048	0.85[AMR][1000 genomes]
rs528985	0.82[AMR][1000 genomes]
rs530157	0.80[AMR][1000 genomes]
rs531472	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs534817	0.85[EUR][1000 genomes]
rs545105	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs550874	0.83[AMR][1000 genomes]
rs551806	0.83[AMR][1000 genomes]
rs552584	0.83[AMR][1000 genomes]
rs553280	0.80[AMR][1000 genomes]
rs553452	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs554711	0.83[AMR][1000 genomes]
rs556035	0.80[AMR][1000 genomes]
rs558723	0.80[AMR][1000 genomes]
rs561469	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs564265	0.83[AMR][1000 genomes]
rs567021	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs567846	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56918739	0.80[ASN][1000 genomes]
rs579458	0.83[AMR][1000 genomes]
rs6424996	0.80[ASN][1000 genomes]
rs6424997	0.80[ASN][1000 genomes]
rs6424998	0.89[ASN][1000 genomes]
rs6665025	0.80[ASN][1000 genomes]
rs7532978	0.80[ASN][1000 genomes]
rs905700	0.80[ASN][1000 genomes]
rs905701	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185556000-185563200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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