Variant report

Variant	rs2821436
Chromosome Location	chr1:185525592-185525593
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185523762..185526492-chr1:185528261..185529807,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11605	0.82[CEU][hapmap];1.00[MEX][hapmap]
rs168004	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs186732	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs193088	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2756198	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2756199	0.82[CEU][hapmap];1.00[MEX][hapmap]
rs2756200	0.81[CEU][hapmap]
rs2756206	0.90[MEX][hapmap]
rs2756209	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2821435	0.82[CEU][hapmap];1.00[MEX][hapmap]
rs2842580	0.95[MEX][hapmap]
rs2842591	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs333704	0.96[CEU][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs333705	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs333706	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs333708	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs333709	0.85[EUR][1000 genomes]
rs333710	0.85[EUR][1000 genomes]
rs333711	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs333712	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs333713	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs333718	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs333724	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs333726	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs333728	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs486969	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs492436	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs494700	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs495416	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs498961	0.95[MEX][hapmap]
rs500228	0.81[AMR][1000 genomes]
rs506429	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs507076	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs516040	0.96[CEU][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs518472	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs521481	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs530157	0.81[AMR][1000 genomes]
rs531472	0.96[CEU][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs534817	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs545105	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs551806	0.95[MEX][hapmap]
rs552584	0.95[MEX][hapmap]
rs553280	0.81[AMR][1000 genomes]
rs553452	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs556035	0.81[AMR][1000 genomes]
rs558723	0.81[AMR][1000 genomes]
rs561469	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs567021	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs567846	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs737490	0.90[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185520800-185528800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:185521000-185533800	Weak transcription	Placenta	Placenta
3	chr1:185524800-185529000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:185525000-185526000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr1:185525000-185528600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr1:185525200-185526600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:185525400-185526000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:185525400-185526400	Enhancers	Osteobl	bone
9	chr1:185525400-185536000	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links