The 2.0 version of rSNPBase

Variant report

Variant rs558723
Chromosome Location chr1:185534069-185534070
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:185525400-185536000 Weak transcription Stomach Mucosa stomach
2 chr1:185528000-185536000 Weak transcription Fetal Kidney kidney
3 chr1:185528600-185539800 Enhancers Primary T helper 17 cells PMA-I stimulated --
4 chr1:185529200-185535400 Weak transcription Small Intestine intestine
5 chr1:185529400-185543000 Weak transcription Pancreas Pancrea
6 chr1:185529600-185535800 Weak transcription Fetal Intestine Large intestine
7 chr1:185530400-185535000 Weak transcription Primary B cells from cord blood blood
8 chr1:185530400-185535400 Weak transcription Duodenum Mucosa Duodenum
9 chr1:185530400-185536000 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr1:185530800-185535800 Weak transcription Monocytes-CD14+_RO01746 blood
11 chr1:185530800-185536600 Weak transcription Left Ventricle heart
12 chr1:185530800-185544000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr1:185531000-185534600 Weak transcription Primary B cells from peripheral blood blood
14 chr1:185531000-185535200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
15 chr1:185531000-185535800 Weak transcription Primary monocytes fromperipheralblood blood
16 chr1:185531200-185534400 Weak transcription Primary hematopoietic stem cells blood
17 chr1:185531200-185536000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr1:185531400-185534400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr1:185531400-185534600 Weak transcription Primary neutrophils fromperipheralblood blood
20 chr1:185531400-185534600 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr1:185531600-185534600 Weak transcription Primary T killer memory cells from peripheral blood blood
22 chr1:185531600-185534600 Weak transcription Fetal Thymus thymus
23 chr1:185531800-185534400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr1:185531800-185534800 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr1:185531800-185540400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr1:185532000-185534400 Weak transcription Primary T helper naive cells from peripheral blood blood
27 chr1:185532200-185536200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr1:185532400-185534400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
29 chr1:185532800-185538800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr1:185533000-185534800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
31 chr1:185533000-185535800 Enhancers Primary T cells fromperipheralblood blood
32 chr1:185533000-185538800 Enhancers HMEC breast
33 chr1:185533000-185540200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr1:185533000-185540800 Enhancers NHEK skin
35 chr1:185533200-185534800 Enhancers Placenta Amnion Placenta Amnion
36 chr1:185533200-185535800 Enhancers Primary T helper cells PMA-I stimulated --
37 chr1:185533200-185536000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
38 chr1:185533400-185534200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr1:185533400-185536000 Enhancers Primary T cells from cord blood blood
40 chr1:185533400-185539000 Enhancers Primary T killer naive cells fromperipheralblood blood
41 chr1:185533600-185536000 Enhancers Primary T helper cells fromperipheralblood blood
42 chr1:185533600-185536400 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr1:185533800-185534200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr1:185533800-185534800 Enhancers Breast Myoepithelial Primary Cells Breast
45 chr1:185533800-185534800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
46 chr1:185533800-185534800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
47 chr1:185533800-185534800 Enhancers Osteobl bone
48 chr1:185533800-185535000 Enhancers Placenta Placenta
49 chr1:185533800-185535000 Enhancers NH-A brain
50 chr1:185533800-185536400 Enhancers Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015