Variant report

Variant	rs6465726
Chromosome Location	chr7:98478680-98478681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98474512..98479039-chr7:98480713..98484899,10	K562	blood:

Variant related genes	Relation type
ENSG00000238459	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10487144	0.84[EUR][1000 genomes]
rs11768515	0.80[AFR][1000 genomes]
rs11771770	0.81[AFR][1000 genomes]
rs11979767	0.84[EUR][1000 genomes]
rs17161491	0.88[ASW][hapmap];0.83[LWK][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes]
rs219843	0.81[EUR][1000 genomes]
rs310742	0.81[AFR][1000 genomes]
rs310744	0.81[AFR][1000 genomes]
rs35310331	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35853712	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6949344	0.83[EUR][1000 genomes]
rs73147839	0.85[EUR][1000 genomes]
rs73147841	0.85[EUR][1000 genomes]
rs73147844	0.85[EUR][1000 genomes]
rs73147848	0.85[EUR][1000 genomes]
rs73147849	0.85[EUR][1000 genomes]
rs73147851	0.85[EUR][1000 genomes]
rs73147853	0.85[EUR][1000 genomes]
rs73147856	0.85[EUR][1000 genomes]
rs73147860	0.91[EUR][1000 genomes]
rs73147866	0.91[EUR][1000 genomes]
rs73155610	0.91[EUR][1000 genomes]
rs73155612	0.91[EUR][1000 genomes]
rs73155615	0.91[EUR][1000 genomes]
rs73155617	0.91[EUR][1000 genomes]
rs73155619	0.91[EUR][1000 genomes]
rs73155624	0.84[EUR][1000 genomes]
rs73155626	0.84[EUR][1000 genomes]
rs73155627	0.84[EUR][1000 genomes]
rs73155628	0.84[EUR][1000 genomes]
rs73155630	0.84[EUR][1000 genomes]
rs73155631	0.84[EUR][1000 genomes]
rs73155633	0.84[EUR][1000 genomes]
rs73155637	0.84[EUR][1000 genomes]
rs73155638	0.84[EUR][1000 genomes]
rs73155639	0.84[EUR][1000 genomes]
rs73155641	0.84[EUR][1000 genomes]
rs73155644	0.84[EUR][1000 genomes]
rs73155645	0.84[EUR][1000 genomes]
rs73155648	0.84[EUR][1000 genomes]
rs73155650	0.84[EUR][1000 genomes]
rs73155654	0.84[EUR][1000 genomes]
rs73155657	0.84[EUR][1000 genomes]
rs73155658	0.84[EUR][1000 genomes]
rs73155659	0.84[EUR][1000 genomes]
rs73155663	0.84[EUR][1000 genomes]
rs73161938	0.84[EUR][1000 genomes]
rs73161939	0.84[EUR][1000 genomes]
rs73161940	0.84[EUR][1000 genomes]
rs73161941	0.84[EUR][1000 genomes]
rs73161943	0.84[EUR][1000 genomes]
rs73161944	0.84[EUR][1000 genomes]
rs73395129	0.81[AFR][1000 genomes]
rs7791007	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98477400-98479800	Weak transcription	Aorta	Aorta
2	chr7:98477400-98480400	Weak transcription	Ovary	ovary
3	chr7:98477600-98478800	Weak transcription	Fetal Stomach	stomach
4	chr7:98477800-98478800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:98477800-98478800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:98477800-98478800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:98477800-98478800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:98477800-98478800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:98477800-98478800	Weak transcription	Brain Anterior Caudate	brain
10	chr7:98477800-98478800	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:98477800-98478800	Enhancers	Fetal Brain Female	brain
12	chr7:98477800-98478800	Weak transcription	Gastric	stomach
13	chr7:98477800-98478800	Weak transcription	Left Ventricle	heart
14	chr7:98477800-98478800	Weak transcription	Lung	lung
15	chr7:98477800-98478800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr7:98477800-98478800	Weak transcription	Spleen	Spleen
17	chr7:98477800-98478800	Weak transcription	HSMM	muscle
18	chr7:98477800-98479000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr7:98477800-98479200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:98477800-98479200	Weak transcription	NH-A	brain
21	chr7:98477800-98479200	Weak transcription	NHDF-Ad	bronchial
22	chr7:98477800-98479800	Weak transcription	Psoas Muscle	Psoas
23	chr7:98477800-98479800	Weak transcription	Right Ventricle	heart
24	chr7:98477800-98480000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:98477800-98480400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr7:98477800-98481200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr7:98477800-98481400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr7:98477800-98482000	Weak transcription	Esophagus	oesophagus
29	chr7:98477800-98484600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr7:98477800-98484600	Weak transcription	Stomach Mucosa	stomach
31	chr7:98477800-98488000	Weak transcription	Small Intestine	intestine
32	chr7:98477800-98490600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr7:98477800-98599600	Weak transcription	Right Atrium	heart
34	chr7:98478000-98478800	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr7:98478000-98478800	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr7:98478000-98478800	Weak transcription	Placenta	Placenta
37	chr7:98478000-98478800	Weak transcription	Osteobl	bone
38	chr7:98478000-98479200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr7:98478000-98479200	Weak transcription	HMEC	breast
40	chr7:98478000-98479200	Weak transcription	HSMMtube	muscle
41	chr7:98478000-98479400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr7:98478000-98479400	Weak transcription	Brain Substantia Nigra	brain
43	chr7:98478000-98479800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr7:98478000-98482000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr7:98478000-98483600	Strong transcription	K562	blood
46	chr7:98478000-98497200	Weak transcription	Fetal Heart	heart
47	chr7:98478000-98618600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr7:98478200-98478800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr7:98478200-98478800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr7:98478200-98478800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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