Variant report

Variant	rs73147860
Chromosome Location	chr7:98486307-98486308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98479946..98481457-chr7:98484756..98487018,2	MCF-7	breast:
2	chr7:98483635..98486309-chr7:98585364..98587553,2	K562	blood:
3	chr7:98475508..98479484-chr7:98483600..98488377,6	MCF-7	breast:
4	chr7:98480873..98482997-chr7:98484839..98487721,2	K562	blood:

Variant related genes	Relation type
ENSG00000266019	Chromatin interaction
ENSG00000196367	Chromatin interaction
ENSG00000238459	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10487144	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11979767	0.93[EUR][1000 genomes]
rs35853712	0.85[EUR][1000 genomes]
rs6465726	0.91[EUR][1000 genomes]
rs73145604	0.87[EUR][1000 genomes]
rs73145605	0.81[EUR][1000 genomes]
rs73145606	0.81[EUR][1000 genomes]
rs73145609	0.81[EUR][1000 genomes]
rs73145611	0.81[EUR][1000 genomes]
rs73145614	0.81[EUR][1000 genomes]
rs73145615	0.81[EUR][1000 genomes]
rs73145619	0.81[EUR][1000 genomes]
rs73145620	0.81[EUR][1000 genomes]
rs73147839	0.93[EUR][1000 genomes]
rs73147841	0.93[EUR][1000 genomes]
rs73147844	0.93[EUR][1000 genomes]
rs73147848	0.93[EUR][1000 genomes]
rs73147849	0.93[EUR][1000 genomes]
rs73147851	0.93[EUR][1000 genomes]
rs73147853	0.93[EUR][1000 genomes]
rs73147856	0.93[EUR][1000 genomes]
rs73147866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155610	1.00[EUR][1000 genomes]
rs73155612	1.00[EUR][1000 genomes]
rs73155615	1.00[EUR][1000 genomes]
rs73155617	1.00[EUR][1000 genomes]
rs73155619	1.00[EUR][1000 genomes]
rs73155624	0.93[EUR][1000 genomes]
rs73155626	0.93[EUR][1000 genomes]
rs73155627	0.93[EUR][1000 genomes]
rs73155628	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155630	0.93[EUR][1000 genomes]
rs73155631	0.93[EUR][1000 genomes]
rs73155633	0.93[EUR][1000 genomes]
rs73155637	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155638	0.93[EUR][1000 genomes]
rs73155639	0.93[EUR][1000 genomes]
rs73155641	0.93[EUR][1000 genomes]
rs73155644	0.93[EUR][1000 genomes]
rs73155645	0.93[EUR][1000 genomes]
rs73155648	0.93[EUR][1000 genomes]
rs73155650	0.93[EUR][1000 genomes]
rs73155654	0.93[EUR][1000 genomes]
rs73155657	0.93[EUR][1000 genomes]
rs73155658	0.93[EUR][1000 genomes]
rs73155659	0.93[EUR][1000 genomes]
rs73155663	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161938	0.93[EUR][1000 genomes]
rs73161939	0.93[EUR][1000 genomes]
rs73161940	0.93[EUR][1000 genomes]
rs73161941	0.93[EUR][1000 genomes]
rs73161943	0.93[EUR][1000 genomes]
rs73161944	0.93[EUR][1000 genomes]
rs73161946	0.83[EUR][1000 genomes]
rs73161947	0.87[EUR][1000 genomes]
rs73161948	0.87[EUR][1000 genomes]
rs73161949	0.87[EUR][1000 genomes]
rs73161950	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98477800-98488000	Weak transcription	Small Intestine	intestine
2	chr7:98477800-98490600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:98477800-98599600	Weak transcription	Right Atrium	heart
4	chr7:98478000-98497200	Weak transcription	Fetal Heart	heart
5	chr7:98478000-98618600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:98478200-98488000	Weak transcription	Colonic Mucosa	Colon
7	chr7:98478200-98488000	Weak transcription	Fetal Brain Male	brain
8	chr7:98478200-98504200	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr7:98478200-98511000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:98478200-98511400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:98478200-98536200	Strong transcription	Fetal Intestine Small	intestine
12	chr7:98478200-98583200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:98478200-98606000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr7:98478400-98488000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:98478400-98503600	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:98478400-98526800	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr7:98478600-98488400	Strong transcription	Primary hematopoietic stem cells	blood
18	chr7:98478600-98492400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr7:98478600-98492600	Strong transcription	Fetal Muscle Trunk	muscle
20	chr7:98478600-98499000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:98478600-98504200	Strong transcription	Duodenum Mucosa	Duodenum
22	chr7:98478600-98504800	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr7:98478600-98505000	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:98478600-98511000	Strong transcription	Thymus	Thymus
25	chr7:98478600-98511800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:98478600-98536200	Strong transcription	Fetal Muscle Leg	muscle
27	chr7:98478600-98541600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr7:98478600-98583200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr7:98478600-98583400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr7:98478600-98613800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr7:98478600-98614400	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr7:98478600-98614800	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr7:98478800-98486400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr7:98478800-98493000	Strong transcription	Fetal Stomach	stomach
35	chr7:98478800-98504200	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr7:98478800-98519400	Strong transcription	Liver	Liver
37	chr7:98478800-98520000	Strong transcription	Osteobl	bone
38	chr7:98478800-98523000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:98478800-98526400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:98478800-98527200	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr7:98478800-98527400	Strong transcription	Primary B cells from peripheral blood	blood
42	chr7:98478800-98536400	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr7:98478800-98583000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr7:98478800-98583800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr7:98478800-98613600	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr7:98478800-98614200	Strong transcription	Placenta	Placenta
47	chr7:98479000-98586200	Strong transcription	Fetal Thymus	thymus
48	chr7:98479200-98486600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr7:98479200-98488600	Strong transcription	NH-A	brain
50	chr7:98479400-98583600	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links