Variant report

Variant	rs73161949
Chromosome Location	chr7:98600262-98600263
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:98600250-98600621	A549	lung:	n/a	n/a
2	POLR2A	chr7:98600196-98600325	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:98598281..98601883-chr7:98602046..98604854,6	K562	blood:
2	chr7:98593014..98596365-chr7:98598996..98601771,4	K562	blood:
3	chr7:98598574..98601557-chr7:98602372..98604854,3	K562	blood:

Variant related genes	Relation type
ENSG00000238109	TF binding region

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10487144	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11979767	0.93[EUR][1000 genomes]
rs73145604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73145605	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145606	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145609	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145611	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145614	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145615	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145616	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73145619	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145620	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145621	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145623	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73145624	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145626	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73145629	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73145635	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73147603	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73147604	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73147839	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73147841	0.81[EUR][1000 genomes]
rs73147844	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73147848	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73147849	0.81[EUR][1000 genomes]
rs73147851	0.81[EUR][1000 genomes]
rs73147853	0.81[EUR][1000 genomes]
rs73147856	0.81[EUR][1000 genomes]
rs73147860	0.87[EUR][1000 genomes]
rs73147866	0.87[EUR][1000 genomes]
rs73155610	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155612	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155615	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155617	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155619	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155624	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155626	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155627	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155628	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155630	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155631	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155633	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155637	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155638	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155639	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155641	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155644	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155645	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155648	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155650	0.93[EUR][1000 genomes]
rs73155654	0.93[EUR][1000 genomes]
rs73155657	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155658	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155659	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155663	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161938	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161939	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161940	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161941	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161943	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161944	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161946	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73161947	1.00[EUR][1000 genomes]
rs73161948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7791007	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1847495	chr7:98556216-98648069	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1034506	chr7:98556216-98678440	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98478000-98618600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:98478200-98606000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:98478600-98613800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:98478600-98614400	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:98478600-98614800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr7:98478800-98613600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr7:98478800-98614200	Strong transcription	Placenta	Placenta
8	chr7:98482400-98613600	Strong transcription	Dnd41	blood
9	chr7:98485000-98615400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:98487200-98603000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:98522000-98614200	Strong transcription	Liver	Liver
12	chr7:98529400-98614800	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr7:98529600-98614400	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr7:98529600-98614600	Strong transcription	Primary B cells from peripheral blood	blood
15	chr7:98531000-98613600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:98531000-98613600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr7:98542800-98618400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:98543000-98613600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr7:98579200-98601000	Strong transcription	HepG2	liver
20	chr7:98583800-98648800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr7:98584000-98602400	Strong transcription	Primary B cells from cord blood	blood
22	chr7:98584000-98611800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:98584000-98613800	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:98584000-98614600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:98584600-98614200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr7:98584600-98614600	Strong transcription	Fetal Muscle Leg	muscle
27	chr7:98584800-98618400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:98585400-98613600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr7:98585600-98614600	Strong transcription	Fetal Stomach	stomach
30	chr7:98586200-98614200	Strong transcription	Fetal Intestine Small	intestine
31	chr7:98587000-98613600	Strong transcription	Primary T cells from cord blood	blood
32	chr7:98587000-98613600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:98587400-98614000	Strong transcription	Thymus	Thymus
34	chr7:98587600-98613600	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr7:98587600-98620200	Strong transcription	Fetal Thymus	thymus
36	chr7:98591800-98614200	Strong transcription	Fetal Brain Female	brain
37	chr7:98592200-98602400	Weak transcription	Fetal Brain Male	brain
38	chr7:98593000-98605600	Weak transcription	Stomach Mucosa	stomach
39	chr7:98594000-98602000	Weak transcription	HSMMtube	muscle
40	chr7:98594000-98603000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr7:98594000-98604000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr7:98594000-98613600	Strong transcription	Pancreas	Pancrea
43	chr7:98594200-98602000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr7:98595000-98601000	Strong transcription	Stomach Smooth Muscle	stomach
45	chr7:98595000-98613600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr7:98595000-98615400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr7:98595200-98608600	Strong transcription	Primary hematopoietic stem cells	blood
48	chr7:98595600-98601600	Strong transcription	Adipose Nuclei	Adipose
49	chr7:98595600-98613400	Strong transcription	Gastric	stomach
50	chr7:98595600-98613600	Strong transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links