Variant report

Variant	rs73161948
Chromosome Location	chr7:98596738-98596739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SMURF1-1	chr7:98596161-98597553	NONHSAT122209

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10487144	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11979767	0.93[EUR][1000 genomes]
rs73145604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73145605	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145606	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145609	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145611	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145614	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145615	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145616	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73145619	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145620	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145621	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145623	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73145624	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145626	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73145629	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73145635	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73147603	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73147604	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73147839	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73147841	0.81[EUR][1000 genomes]
rs73147844	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73147848	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73147849	0.81[EUR][1000 genomes]
rs73147851	0.81[EUR][1000 genomes]
rs73147853	0.81[EUR][1000 genomes]
rs73147856	0.81[EUR][1000 genomes]
rs73147860	0.87[EUR][1000 genomes]
rs73147866	0.87[EUR][1000 genomes]
rs73155610	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155612	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155615	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155617	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155619	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155624	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155626	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155627	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155628	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155630	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155631	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155633	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155637	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155638	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155639	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155641	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155644	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155645	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155648	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155650	0.93[EUR][1000 genomes]
rs73155654	0.93[EUR][1000 genomes]
rs73155657	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155658	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155659	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155663	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161938	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161939	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161940	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161941	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161943	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161944	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161946	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73161947	1.00[EUR][1000 genomes]
rs73161949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7791007	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1847495	chr7:98556216-98648069	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1034506	chr7:98556216-98678440	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98477800-98599600	Weak transcription	Right Atrium	heart
2	chr7:98478000-98618600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:98478200-98606000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:98478600-98613800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:98478600-98614400	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:98478600-98614800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr7:98478800-98613600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr7:98478800-98614200	Strong transcription	Placenta	Placenta
9	chr7:98482400-98613600	Strong transcription	Dnd41	blood
10	chr7:98485000-98615400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:98487200-98603000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:98520800-98598400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:98522000-98614200	Strong transcription	Liver	Liver
14	chr7:98529400-98614800	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr7:98529600-98614400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr7:98529600-98614600	Strong transcription	Primary B cells from peripheral blood	blood
17	chr7:98531000-98613600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr7:98531000-98613600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr7:98542800-98618400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:98543000-98613600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:98558800-98598800	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr7:98579000-98597400	Strong transcription	NH-A	brain
23	chr7:98579200-98601000	Strong transcription	HepG2	liver
24	chr7:98583800-98648800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr7:98584000-98598000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:98584000-98602400	Strong transcription	Primary B cells from cord blood	blood
27	chr7:98584000-98611800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:98584000-98613800	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr7:98584000-98614600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:98584200-98599400	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr7:98584600-98614200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr7:98584600-98614600	Strong transcription	Fetal Muscle Leg	muscle
33	chr7:98584800-98618400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:98585400-98613600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr7:98585600-98614600	Strong transcription	Fetal Stomach	stomach
36	chr7:98586200-98614200	Strong transcription	Fetal Intestine Small	intestine
37	chr7:98587000-98613600	Strong transcription	Primary T cells from cord blood	blood
38	chr7:98587000-98613600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr7:98587400-98614000	Strong transcription	Thymus	Thymus
40	chr7:98587600-98613600	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr7:98587600-98620200	Strong transcription	Fetal Thymus	thymus
42	chr7:98591800-98614200	Strong transcription	Fetal Brain Female	brain
43	chr7:98592200-98602400	Weak transcription	Fetal Brain Male	brain
44	chr7:98593000-98605600	Weak transcription	Stomach Mucosa	stomach
45	chr7:98593200-98597800	Strong transcription	K562	blood
46	chr7:98593800-98598000	Weak transcription	Small Intestine	intestine
47	chr7:98594000-98596800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr7:98594000-98597800	Weak transcription	Colon Smooth Muscle	Colon
49	chr7:98594000-98598400	Weak transcription	NHDF-Ad	bronchial
50	chr7:98594000-98599400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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