Variant report

Variant	rs73145614
Chromosome Location	chr7:98616092-98616093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98615180..98618058-chr7:98621692..98623202,2	K562	blood:
2	chr7:98609693..98611937-chr7:98613589..98616987,3	K562	blood:

Variant related genes	Relation type
ENSG00000242687	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10487144	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11979767	0.87[EUR][1000 genomes]
rs73145604	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73145606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73145609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73145611	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73145615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73145616	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145619	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73145620	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73145621	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145623	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73145624	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145626	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73145629	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73145635	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73147603	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73147604	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73147839	1.00[AMR][1000 genomes]
rs73147844	0.87[AMR][1000 genomes]
rs73147848	1.00[AMR][1000 genomes]
rs73147860	0.81[EUR][1000 genomes]
rs73147866	0.81[EUR][1000 genomes]
rs73155610	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155612	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155615	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155617	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155619	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155624	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155626	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155627	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155628	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155630	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155631	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155633	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155637	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155638	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155639	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155641	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155644	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155645	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155648	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155650	0.87[EUR][1000 genomes]
rs73155654	0.87[EUR][1000 genomes]
rs73155657	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155658	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155659	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155663	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161938	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161939	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161940	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161941	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161943	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161944	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161946	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73161947	0.93[EUR][1000 genomes]
rs73161948	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161949	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161950	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7791007	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1847495	chr7:98556216-98648069	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1034506	chr7:98556216-98678440	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98478000-98618600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:98542800-98618400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:98583800-98648800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:98584800-98618400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:98587600-98620200	Strong transcription	Fetal Thymus	thymus
6	chr7:98604200-98627000	Weak transcription	Fetal Heart	heart
7	chr7:98604800-98617200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:98604800-98627000	Weak transcription	Fetal Brain Male	brain
9	chr7:98607200-98629200	Weak transcription	Psoas Muscle	Psoas
10	chr7:98608800-98617200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:98610200-98625400	Weak transcription	Small Intestine	intestine
12	chr7:98610400-98617200	Weak transcription	Stomach Mucosa	stomach
13	chr7:98611400-98617600	Weak transcription	HMEC	breast
14	chr7:98611800-98617000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr7:98612000-98627800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:98612400-98617400	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:98612400-98617600	Weak transcription	Aorta	Aorta
18	chr7:98612400-98619400	Weak transcription	Brain Substantia Nigra	brain
19	chr7:98612400-98619800	Weak transcription	Colonic Mucosa	Colon
20	chr7:98612400-98627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr7:98612400-98632000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr7:98612600-98625200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr7:98612600-98627000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:98612800-98617200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:98612800-98617200	Weak transcription	NHLF	lung
26	chr7:98612800-98618000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr7:98612800-98626400	Weak transcription	Brain Angular Gyrus	brain
28	chr7:98613000-98617400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr7:98613400-98616600	Weak transcription	HSMMtube	muscle
30	chr7:98613400-98616800	Weak transcription	Spleen	Spleen
31	chr7:98613400-98617000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:98613400-98617400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr7:98613400-98617400	Weak transcription	Gastric	stomach
34	chr7:98613400-98617600	Weak transcription	Left Ventricle	heart
35	chr7:98613400-98617600	Weak transcription	Ovary	ovary
36	chr7:98613400-98619800	Weak transcription	Lung	lung
37	chr7:98613400-98625400	Weak transcription	Esophagus	oesophagus
38	chr7:98613400-98626000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr7:98613400-98629400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr7:98613600-98616200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr7:98613600-98616200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr7:98613600-98616200	Weak transcription	NH-A	brain
43	chr7:98613600-98616400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:98613600-98616600	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr7:98613600-98616600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr7:98613600-98616600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr7:98613600-98616600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr7:98613600-98616600	Weak transcription	Brain Cingulate Gyrus	brain
49	chr7:98613600-98616600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr7:98613600-98616600	Weak transcription	Rectal Mucosa Donor 31	rectum

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