Variant report

Variant	rs73145621
Chromosome Location	chr7:98631546-98631547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98625274..98628239-chr7:98630668..98632654,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10487144	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11979767	0.84[EUR][1000 genomes]
rs73145604	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145605	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145606	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145609	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145611	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145614	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145615	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145616	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73145619	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145620	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145623	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145624	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145626	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145629	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145635	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73147603	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73147604	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73147839	1.00[AMR][1000 genomes]
rs73147844	0.87[AMR][1000 genomes]
rs73147848	1.00[AMR][1000 genomes]
rs73155610	1.00[AMR][1000 genomes]
rs73155612	1.00[AMR][1000 genomes]
rs73155615	1.00[AMR][1000 genomes]
rs73155617	1.00[AMR][1000 genomes]
rs73155619	1.00[AMR][1000 genomes]
rs73155624	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73155626	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73155627	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73155628	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73155630	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73155631	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73155633	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73155637	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73155638	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73155639	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73155641	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73155644	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73155645	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73155648	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73155650	0.84[EUR][1000 genomes]
rs73155654	0.84[EUR][1000 genomes]
rs73155657	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73155658	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73155659	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73155663	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73161938	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73161939	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73161940	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73161941	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73161943	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73161944	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73161946	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161947	0.90[EUR][1000 genomes]
rs73161948	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73161949	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73161950	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7791007	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1847495	chr7:98556216-98648069	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1034506	chr7:98556216-98678440	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98583800-98648800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:98612400-98632000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr7:98623400-98640200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:98624600-98637200	Strong transcription	Fetal Intestine Large	intestine
5	chr7:98624800-98633400	Strong transcription	Brain Substantia Nigra	brain
6	chr7:98624800-98637200	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr7:98624800-98644200	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:98624800-98651200	Strong transcription	Primary hematopoietic stem cells	blood
9	chr7:98624800-98653000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr7:98624800-98655200	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:98624800-98656600	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr7:98624800-98656600	Strong transcription	Dnd41	blood
13	chr7:98624800-98657800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:98624800-98658400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr7:98625000-98655000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:98625000-98656400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:98625000-98656600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:98625000-98656600	Strong transcription	Fetal Thymus	thymus
19	chr7:98625200-98655200	Strong transcription	Primary B cells from peripheral blood	blood
20	chr7:98625200-98655400	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr7:98625200-98658800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:98625400-98633600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr7:98625400-98633600	Strong transcription	Brain Hippocampus Middle	brain
24	chr7:98625400-98633800	Strong transcription	Brain Cingulate Gyrus	brain
25	chr7:98625400-98634200	Strong transcription	NHLF	lung
26	chr7:98625400-98636600	Strong transcription	Esophagus	oesophagus
27	chr7:98625400-98637400	Strong transcription	Duodenum Mucosa	Duodenum
28	chr7:98625400-98638000	Strong transcription	Placenta	Placenta
29	chr7:98625400-98638400	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr7:98625400-98639400	Strong transcription	Colon Smooth Muscle	Colon
31	chr7:98625400-98639600	Strong transcription	NHEK	skin
32	chr7:98625400-98639800	Strong transcription	Placenta Amnion	Placenta Amnion
33	chr7:98625400-98640000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr7:98625400-98642000	Strong transcription	Thymus	Thymus
35	chr7:98625400-98644200	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr7:98625400-98655000	Strong transcription	Primary B cells from cord blood	blood
37	chr7:98625400-98655200	Strong transcription	Primary T cells from cord blood	blood
38	chr7:98625400-98655200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr7:98625400-98655200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr7:98625400-98655200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr7:98625400-98657800	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr7:98625600-98633400	Strong transcription	Brain Inferior Temporal Lobe	brain
43	chr7:98625600-98633600	Strong transcription	GM12878-XiMat	blood
44	chr7:98625600-98634200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:98625600-98636400	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr7:98625600-98637800	Strong transcription	Colonic Mucosa	Colon
47	chr7:98625600-98637800	Strong transcription	Rectal Smooth Muscle	rectum
48	chr7:98625600-98638200	Strong transcription	Pancreas	Pancrea
49	chr7:98625600-98638400	Strong transcription	Gastric	stomach
50	chr7:98625600-98639400	Strong transcription	Right Ventricle	heart

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