Variant report

Variant	rs7791007
Chromosome Location	chr7:98674362-98674363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98674124..98676078-chr7:98687673..98689400,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10487144	0.87[AMR][1000 genomes]
rs73145604	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73145605	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145606	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145609	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145611	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145614	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145615	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145616	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73145619	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145620	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145621	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73145623	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145624	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145626	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145629	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145635	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73147603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73147604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155610	1.00[AMR][1000 genomes]
rs73155612	1.00[AMR][1000 genomes]
rs73155615	1.00[AMR][1000 genomes]
rs73155617	1.00[AMR][1000 genomes]
rs73155619	1.00[AMR][1000 genomes]
rs73155624	1.00[AMR][1000 genomes]
rs73155626	1.00[AMR][1000 genomes]
rs73155627	1.00[AMR][1000 genomes]
rs73155628	0.87[AMR][1000 genomes]
rs73155630	1.00[AMR][1000 genomes]
rs73155631	1.00[AMR][1000 genomes]
rs73155633	1.00[AMR][1000 genomes]
rs73155637	0.87[AMR][1000 genomes]
rs73155638	1.00[AMR][1000 genomes]
rs73155639	1.00[AMR][1000 genomes]
rs73155641	1.00[AMR][1000 genomes]
rs73155644	1.00[AMR][1000 genomes]
rs73155645	1.00[AMR][1000 genomes]
rs73155648	1.00[AMR][1000 genomes]
rs73155657	1.00[AMR][1000 genomes]
rs73155658	1.00[AMR][1000 genomes]
rs73155659	1.00[AMR][1000 genomes]
rs73155663	0.87[AMR][1000 genomes]
rs73161938	1.00[AMR][1000 genomes]
rs73161939	1.00[AMR][1000 genomes]
rs73161940	1.00[AMR][1000 genomes]
rs73161941	1.00[AMR][1000 genomes]
rs73161943	1.00[AMR][1000 genomes]
rs73161944	1.00[AMR][1000 genomes]
rs73161946	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73161947	0.84[EUR][1000 genomes]
rs73161948	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73161949	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73161950	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1034506	chr7:98556216-98678440	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98638600-98676000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98650200-98681000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr7:98650400-98676600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:98653000-98690800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr7:98653600-98676600	Weak transcription	Spleen	Spleen
6	chr7:98654000-98676400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:98654000-98676600	Weak transcription	NHLF	lung
8	chr7:98654800-98690200	Weak transcription	Fetal Kidney	kidney
9	chr7:98655000-98676600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:98655000-98676800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr7:98655200-98674400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:98655200-98675800	Weak transcription	Fetal Brain Female	brain
13	chr7:98655200-98676200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr7:98655200-98676600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr7:98655200-98676600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:98655200-98676600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr7:98655200-98676600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr7:98655200-98676600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr7:98655200-98676600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr7:98655200-98676600	Weak transcription	Thymus	Thymus
21	chr7:98655200-98676600	Weak transcription	A549	lung
22	chr7:98655200-98676600	Weak transcription	HSMM	muscle
23	chr7:98655200-98681000	Weak transcription	Hela-S3	cervix
24	chr7:98656400-98676800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:98656400-98685400	Weak transcription	HSMMtube	muscle
26	chr7:98656600-98676600	Weak transcription	HMEC	breast
27	chr7:98656600-98676800	Weak transcription	Fetal Lung	lung
28	chr7:98656600-98683400	Weak transcription	Fetal Intestine Large	intestine
29	chr7:98657800-98681000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:98658400-98676200	Weak transcription	Fetal Intestine Small	intestine
31	chr7:98658400-98676600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr7:98658400-98676800	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr7:98658800-98684200	Weak transcription	Dnd41	blood
34	chr7:98659200-98684000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr7:98659600-98676200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:98665600-98676600	Weak transcription	Right Atrium	heart
37	chr7:98666000-98676400	Weak transcription	Aorta	Aorta
38	chr7:98666200-98676200	Weak transcription	Esophagus	oesophagus
39	chr7:98667000-98676200	Weak transcription	Brain Anterior Caudate	brain
40	chr7:98668200-98676200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr7:98668200-98676600	Weak transcription	NHDF-Ad	bronchial
42	chr7:98668400-98676200	Weak transcription	Psoas Muscle	Psoas
43	chr7:98668400-98676600	Weak transcription	Adipose Nuclei	Adipose
44	chr7:98668400-98676600	Weak transcription	Brain Substantia Nigra	brain
45	chr7:98668600-98676800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr7:98668600-98684800	Weak transcription	Primary B cells from peripheral blood	blood
47	chr7:98669600-98676600	Weak transcription	Colon Smooth Muscle	Colon
48	chr7:98670200-98676200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr7:98670200-98676200	Weak transcription	Lung	lung
50	chr7:98670600-98676200	Weak transcription	Stomach Mucosa	stomach

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