Variant report

Variant	rs10487144
Chromosome Location	chr7:98532789-98532790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98532539..98535518-chr7:98539632..98541743,2	K562	blood:
2	chr7:98519989..98521528-chr7:98531493..98533979,2	MCF-7	breast:
3	chr7:98532368..98534312-chr7:98551514..98554200,2	K562	blood:
4	chr7:98530745..98533501-chr7:98549494..98551031,2	K562	blood:
5	chr7:98531207..98533570-chr7:98544501..98547364,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11976266	1.00[YRI][hapmap]
rs11979767	1.00[EUR][1000 genomes]
rs6465726	0.84[EUR][1000 genomes]
rs6949344	0.80[EUR][1000 genomes]
rs73145604	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145605	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73145606	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73145609	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73145611	0.87[EUR][1000 genomes]
rs73145614	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73145615	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73145616	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73145619	0.87[EUR][1000 genomes]
rs73145620	0.87[EUR][1000 genomes]
rs73145621	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73145623	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73145624	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73145626	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73145629	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73145635	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73147603	0.87[AMR][1000 genomes]
rs73147604	0.87[AMR][1000 genomes]
rs73147839	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73147841	0.87[EUR][1000 genomes]
rs73147844	0.87[EUR][1000 genomes]
rs73147848	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73147849	0.87[EUR][1000 genomes]
rs73147851	0.87[EUR][1000 genomes]
rs73147853	0.87[EUR][1000 genomes]
rs73147856	0.87[EUR][1000 genomes]
rs73147860	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73147866	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155610	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155612	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155615	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155617	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155619	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155624	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155626	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155627	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155630	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155631	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155633	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155638	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155639	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155641	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155644	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155645	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155648	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155650	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155654	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155657	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155658	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155659	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161938	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161939	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161940	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161941	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161943	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161944	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161946	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73161947	0.93[EUR][1000 genomes]
rs73161948	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161949	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161950	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7791007	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98477800-98599600	Weak transcription	Right Atrium	heart
2	chr7:98478000-98618600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:98478200-98536200	Strong transcription	Fetal Intestine Small	intestine
4	chr7:98478200-98583200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:98478200-98606000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr7:98478600-98536200	Strong transcription	Fetal Muscle Leg	muscle
7	chr7:98478600-98541600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:98478600-98583200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:98478600-98583400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:98478600-98613800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:98478600-98614400	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr7:98478600-98614800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr7:98478800-98536400	Strong transcription	Sigmoid Colon	Sigmoid Colon
14	chr7:98478800-98583000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:98478800-98583800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr7:98478800-98613600	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr7:98478800-98614200	Strong transcription	Placenta	Placenta
18	chr7:98479000-98586200	Strong transcription	Fetal Thymus	thymus
19	chr7:98479400-98583600	Strong transcription	Primary T cells from cord blood	blood
20	chr7:98482400-98613600	Strong transcription	Dnd41	blood
21	chr7:98485000-98615400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:98486200-98596400	Strong transcription	Fetal Intestine Large	intestine
23	chr7:98487200-98603000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:98487600-98541200	Strong transcription	Stomach Smooth Muscle	stomach
25	chr7:98488000-98594200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:98492400-98536400	Strong transcription	Left Ventricle	heart
27	chr7:98492800-98583600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:98493800-98536400	Strong transcription	Fetal Stomach	stomach
29	chr7:98493800-98594600	Strong transcription	Fetal Muscle Trunk	muscle
30	chr7:98504000-98541800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr7:98505000-98542800	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr7:98505800-98583400	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr7:98505800-98594400	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:98506000-98583200	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr7:98512600-98533600	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr7:98512600-98542400	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr7:98512600-98583600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr7:98512800-98540800	Strong transcription	Colonic Mucosa	Colon
39	chr7:98512800-98583600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr7:98512800-98586600	Strong transcription	Thymus	Thymus
41	chr7:98512800-98594800	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr7:98513000-98541800	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr7:98513200-98558000	Strong transcription	Brain Germinal Matrix	brain
44	chr7:98513200-98583400	Strong transcription	Primary B cells from cord blood	blood
45	chr7:98517000-98541200	Strong transcription	HMEC	breast
46	chr7:98518600-98542400	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr7:98519000-98541200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr7:98519400-98542600	Strong transcription	NH-A	brain
49	chr7:98520400-98541600	Strong transcription	Adipose Nuclei	Adipose
50	chr7:98520600-98541000	Strong transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links