Variant report

Variant	rs73147839
Chromosome Location	chr7:98450510-98450511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98446385..98447919-chr7:98449199..98451634,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10487144	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11979767	0.87[EUR][1000 genomes]
rs34840527	1.00[AFR][1000 genomes]
rs6465726	0.85[EUR][1000 genomes]
rs73145604	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73145605	1.00[AMR][1000 genomes]
rs73145606	1.00[AMR][1000 genomes]
rs73145609	1.00[AMR][1000 genomes]
rs73145611	0.87[AMR][1000 genomes]
rs73145614	1.00[AMR][1000 genomes]
rs73145615	1.00[AMR][1000 genomes]
rs73145616	1.00[AMR][1000 genomes]
rs73145619	0.85[AMR][1000 genomes]
rs73145620	0.85[AMR][1000 genomes]
rs73145621	1.00[AMR][1000 genomes]
rs73145623	1.00[AMR][1000 genomes]
rs73145624	1.00[AMR][1000 genomes]
rs73145626	1.00[AMR][1000 genomes]
rs73145629	1.00[AMR][1000 genomes]
rs73147841	1.00[EUR][1000 genomes]
rs73147844	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73147848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73147849	1.00[EUR][1000 genomes]
rs73147851	1.00[EUR][1000 genomes]
rs73147853	1.00[EUR][1000 genomes]
rs73147856	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73147860	0.93[EUR][1000 genomes]
rs73147866	0.93[EUR][1000 genomes]
rs73155610	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155612	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155615	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155617	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155619	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155624	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155626	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155627	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155628	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155630	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155631	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155637	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155638	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155639	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155641	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155644	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155645	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155648	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155650	0.87[EUR][1000 genomes]
rs73155654	0.87[EUR][1000 genomes]
rs73155657	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155658	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155659	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73155663	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161938	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161939	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161940	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161941	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161943	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161944	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161946	1.00[AMR][1000 genomes]
rs73161947	0.81[EUR][1000 genomes]
rs73161948	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73161949	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73161950	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98445800-98452000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:98446200-98450800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:98447000-98451400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr7:98447200-98454200	Strong transcription	Fetal Brain Female	brain
5	chr7:98447600-98451200	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:98447800-98450800	Strong transcription	Fetal Stomach	stomach
7	chr7:98447800-98451800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:98448600-98465000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:98449000-98459800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:98449200-98464200	Weak transcription	Fetal Brain Male	brain
11	chr7:98449200-98465000	Weak transcription	Right Atrium	heart
12	chr7:98449600-98450800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:98449600-98451400	Weak transcription	Brain Germinal Matrix	brain
14	chr7:98450200-98450800	Strong transcription	Brain Anterior Caudate	brain
15	chr7:98450200-98450800	Strong transcription	Brain Cingulate Gyrus	brain
16	chr7:98450200-98452400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:98450200-98454000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:98450400-98450600	Strong transcription	Aorta	Aorta
19	chr7:98450400-98451000	Strong transcription	Brain Angular Gyrus	brain
20	chr7:98450400-98451000	Strong transcription	Brain Inferior Temporal Lobe	brain
21	chr7:98450400-98452200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:98450400-98452200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr7:98450400-98452200	Enhancers	HSMMtube	muscle
24	chr7:98450400-98452400	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr7:98450400-98452400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr7:98450400-98452400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr7:98450400-98452400	Enhancers	NH-A	brain
28	chr7:98450400-98452400	Enhancers	Osteobl	bone
29	chr7:98450400-98452600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:98450400-98453000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:98450400-98453600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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