Variant report

Variant	rs73145629
Chromosome Location	chr7:98650145-98650146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98648374..98650472-chr7:98739795..98741916,2	MCF-7	breast:
2	chr7:98649358..98651802-chr7:98835444..98838202,2	K562	blood:
3	chr7:98646080..98648721-chr7:98649855..98652617,3	K562	blood:
4	chr7:98649204..98650841-chr7:98651063..98653272,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000002079	Chromatin interaction
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10487144	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11979767	0.81[EUR][1000 genomes]
rs73145604	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73145605	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73145606	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73145609	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73145611	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73145614	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73145615	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73145616	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73145619	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73145620	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73145621	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73145624	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145626	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73145635	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73147603	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73147604	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73147839	1.00[AMR][1000 genomes]
rs73147844	0.87[AMR][1000 genomes]
rs73147848	1.00[AMR][1000 genomes]
rs73155610	1.00[AMR][1000 genomes]
rs73155612	1.00[AMR][1000 genomes]
rs73155615	1.00[AMR][1000 genomes]
rs73155617	1.00[AMR][1000 genomes]
rs73155619	1.00[AMR][1000 genomes]
rs73155624	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155626	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155627	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155628	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155630	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155631	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155633	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155637	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155638	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155639	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155641	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155644	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155645	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155648	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155650	0.81[EUR][1000 genomes]
rs73155654	0.81[EUR][1000 genomes]
rs73155657	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155658	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155659	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73155663	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73161938	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73161939	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73161940	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73161941	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73161943	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73161944	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73161946	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73161947	0.87[EUR][1000 genomes]
rs73161948	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161949	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161950	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7791007	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1034506	chr7:98556216-98678440	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98624800-98651200	Strong transcription	Primary hematopoietic stem cells	blood
2	chr7:98624800-98653000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:98624800-98655200	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:98624800-98656600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:98624800-98656600	Strong transcription	Dnd41	blood
6	chr7:98624800-98657800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr7:98624800-98658400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr7:98625000-98655000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:98625000-98656400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:98625000-98656600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:98625000-98656600	Strong transcription	Fetal Thymus	thymus
12	chr7:98625200-98655200	Strong transcription	Primary B cells from peripheral blood	blood
13	chr7:98625200-98655400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr7:98625200-98658800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:98625400-98655000	Strong transcription	Primary B cells from cord blood	blood
16	chr7:98625400-98655200	Strong transcription	Primary T cells from cord blood	blood
17	chr7:98625400-98655200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr7:98625400-98655200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr7:98625400-98655200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:98625400-98657800	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr7:98625600-98652400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr7:98625600-98652600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:98625600-98658800	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr7:98626000-98656400	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:98626200-98656400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr7:98626600-98659200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:98628000-98655200	Strong transcription	Brain Germinal Matrix	brain
28	chr7:98628000-98656400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:98628000-98658800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:98628200-98650400	Strong transcription	Fetal Lung	lung
31	chr7:98628200-98651600	Strong transcription	HSMM	muscle
32	chr7:98628200-98652400	Strong transcription	Fetal Brain Female	brain
33	chr7:98628200-98655200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr7:98628200-98656400	Strong transcription	HSMMtube	muscle
35	chr7:98628200-98656600	Strong transcription	Left Ventricle	heart
36	chr7:98628400-98651400	Weak transcription	Right Atrium	heart
37	chr7:98628400-98656600	Strong transcription	Lung	lung
38	chr7:98638600-98655200	Strong transcription	Fetal Muscle Trunk	muscle
39	chr7:98638600-98655600	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr7:98638600-98656400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr7:98638600-98656600	Strong transcription	Fetal Muscle Leg	muscle
42	chr7:98638600-98656600	Strong transcription	Placenta	Placenta
43	chr7:98638600-98658400	Strong transcription	Adipose Nuclei	Adipose
44	chr7:98638600-98658400	Strong transcription	Fetal Stomach	stomach
45	chr7:98638600-98676000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr7:98638800-98655200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr7:98639400-98656600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr7:98639800-98656600	Strong transcription	Liver	Liver
49	chr7:98639800-98658400	Strong transcription	Fetal Intestine Small	intestine
50	chr7:98639800-98658800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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