Variant report

Variant	rs73155619
Chromosome Location	chr7:98509020-98509021
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98496382..98498706-chr7:98509020..98511408,2	K562	blood:
2	chr7:12250565..12251504-chr7:98508643..98509143,2	Hela-S3	cervix:
3	chr7:98507121..98509614-chr7:98520494..98522078,2	MCF-7	breast:
4	chr7:98505961..98509531-chr7:98510241..98514309,5	MCF-7	breast:
5	chr7:98504347..98507230-chr7:98507610..98509241,2	K562	blood:

Variant related genes	Relation type
ENSG00000106460	Chromatin interaction
ENSG00000196367	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10487144	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11979767	0.93[EUR][1000 genomes]
rs35853712	0.85[EUR][1000 genomes]
rs6465726	0.91[EUR][1000 genomes]
rs73145604	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73145605	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73145606	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73145609	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73145611	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73145614	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73145615	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73145616	1.00[AMR][1000 genomes]
rs73145619	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73145620	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73145621	1.00[AMR][1000 genomes]
rs73145623	1.00[AMR][1000 genomes]
rs73145624	1.00[AMR][1000 genomes]
rs73145626	1.00[AMR][1000 genomes]
rs73145629	1.00[AMR][1000 genomes]
rs73145635	1.00[AMR][1000 genomes]
rs73147603	1.00[AMR][1000 genomes]
rs73147604	1.00[AMR][1000 genomes]
rs73147839	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73147841	0.93[EUR][1000 genomes]
rs73147844	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73147848	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73147849	0.93[EUR][1000 genomes]
rs73147851	0.93[EUR][1000 genomes]
rs73147853	0.93[EUR][1000 genomes]
rs73147856	0.93[EUR][1000 genomes]
rs73147860	1.00[EUR][1000 genomes]
rs73147866	1.00[EUR][1000 genomes]
rs73155610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155624	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155626	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155627	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155628	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155630	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155631	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155633	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155637	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155638	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155639	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155641	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155644	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155645	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155648	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155650	0.93[EUR][1000 genomes]
rs73155654	0.93[EUR][1000 genomes]
rs73155657	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155658	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155659	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73155663	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161938	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161939	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161940	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161941	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161943	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161944	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73161946	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73161947	0.87[EUR][1000 genomes]
rs73161948	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161949	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73161950	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7791007	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98477800-98599600	Weak transcription	Right Atrium	heart
2	chr7:98478000-98618600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:98478200-98511000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:98478200-98511400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:98478200-98536200	Strong transcription	Fetal Intestine Small	intestine
6	chr7:98478200-98583200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:98478200-98606000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr7:98478400-98526800	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr7:98478600-98511000	Strong transcription	Thymus	Thymus
10	chr7:98478600-98511800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:98478600-98536200	Strong transcription	Fetal Muscle Leg	muscle
12	chr7:98478600-98541600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:98478600-98583200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:98478600-98583400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:98478600-98613800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:98478600-98614400	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr7:98478600-98614800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr7:98478800-98519400	Strong transcription	Liver	Liver
19	chr7:98478800-98520000	Strong transcription	Osteobl	bone
20	chr7:98478800-98523000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:98478800-98526400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:98478800-98527200	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr7:98478800-98527400	Strong transcription	Primary B cells from peripheral blood	blood
24	chr7:98478800-98536400	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr7:98478800-98583000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:98478800-98583800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr7:98478800-98613600	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr7:98478800-98614200	Strong transcription	Placenta	Placenta
29	chr7:98479000-98586200	Strong transcription	Fetal Thymus	thymus
30	chr7:98479400-98583600	Strong transcription	Primary T cells from cord blood	blood
31	chr7:98479600-98512000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr7:98482400-98613600	Strong transcription	Dnd41	blood
33	chr7:98484200-98511000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
34	chr7:98484400-98517600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr7:98484600-98509200	Strong transcription	Fetal Brain Female	brain
36	chr7:98484600-98511800	Strong transcription	Adipose Nuclei	Adipose
37	chr7:98484600-98527400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr7:98485000-98615400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr7:98486200-98510800	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr7:98486200-98511800	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr7:98486200-98511800	Strong transcription	A549	lung
42	chr7:98486200-98512000	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr7:98486200-98596400	Strong transcription	Fetal Intestine Large	intestine
44	chr7:98486400-98511800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr7:98486600-98527400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr7:98486800-98520000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr7:98487200-98603000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr7:98487400-98527000	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr7:98487600-98541200	Strong transcription	Stomach Smooth Muscle	stomach
50	chr7:98487800-98511000	Strong transcription	Rectal Smooth Muscle	rectum

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