The 2.0 version of rSNPBase

Variant report

Variant rs6488521
Chromosome Location chr12:12554662-12554663
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:12521800-12556200 Weak transcription Primary hematopoietic stem cells blood
2 chr12:12526400-12558800 Weak transcription Stomach Smooth Muscle stomach
3 chr12:12532800-12556400 Weak transcription Spleen Spleen
4 chr12:12533400-12555800 Weak transcription Monocytes-CD14+_RO01746 blood
5 chr12:12533600-12555400 Weak transcription Primary monocytes fromperipheralblood blood
6 chr12:12535400-12561400 Weak transcription Primary B cells from peripheral blood blood
7 chr12:12537200-12576000 Weak transcription Primary B cells from cord blood blood
8 chr12:12538400-12555400 Weak transcription Primary hematopoietic stem cells short term culture blood
9 chr12:12538400-12556200 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr12:12538600-12561800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
11 chr12:12540200-12560600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
12 chr12:12540600-12556200 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr12:12540800-12555400 Weak transcription Duodenum Mucosa Duodenum
14 chr12:12541400-12562800 Weak transcription Psoas Muscle Psoas
15 chr12:12541800-12557200 Weak transcription Primary T cells fromperipheralblood blood
16 chr12:12543000-12558800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr12:12545800-12555200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr12:12545800-12555200 Weak transcription Fetal Intestine Small intestine
19 chr12:12546000-12556400 Weak transcription K562 blood
20 chr12:12547200-12556000 Weak transcription Fetal Thymus thymus
21 chr12:12547600-12555400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
22 chr12:12550000-12556000 Weak transcription Primary T regulatory cells fromperipheralblood blood
23 chr12:12550000-12556400 Weak transcription Thymus Thymus
24 chr12:12550400-12556200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
25 chr12:12551000-12555800 Weak transcription Primary T cells from cord blood blood
26 chr12:12551000-12559000 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr12:12551200-12558800 Weak transcription Rectal Smooth Muscle rectum
28 chr12:12551600-12558800 Weak transcription Colon Smooth Muscle Colon
29 chr12:12551800-12555000 Weak transcription Fetal Intestine Large intestine
30 chr12:12551800-12555200 Weak transcription Small Intestine intestine
31 chr12:12551800-12555400 Weak transcription Aorta Aorta
32 chr12:12551800-12556200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr12:12552000-12555400 Weak transcription Placenta Placenta
34 chr12:12552000-12556000 Weak transcription Fetal Kidney kidney
35 chr12:12552000-12556000 Weak transcription HUVEC blood vessel
36 chr12:12552000-12557800 Weak transcription Gastric stomach
37 chr12:12552000-12558800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr12:12552000-12558800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr12:12552000-12558800 Weak transcription Lung lung
40 chr12:12552000-12559000 Weak transcription HSMM muscle
41 chr12:12552000-12559800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
42 chr12:12552000-12561400 Weak transcription HSMMtube muscle
43 chr12:12552000-12569000 Weak transcription Hela-S3 cervix
44 chr12:12552200-12558600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr12:12552400-12555200 Weak transcription Primary neutrophils fromperipheralblood blood
46 chr12:12552400-12556200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
47 chr12:12552400-12556200 Weak transcription Pancreas Pancrea
48 chr12:12552800-12556800 Weak transcription HUES48 Cell Line embryonic stem cell
49 chr12:12552800-12558600 Weak transcription Pancreatic Islets Pancreatic Islet
50 chr12:12552800-12558800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015