Variant report

Variant	rs7978842
Chromosome Location	chr12:12574584-12574585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11831188	1.00[ASN][1000 genomes]
rs11831555	1.00[ASN][1000 genomes]
rs16908006	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16908019	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1861674	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2193270	0.88[AFR][1000 genomes]
rs4763824	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4763827	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4763828	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4763831	0.83[ASN][1000 genomes]
rs56261569	0.81[ASN][1000 genomes]
rs58218344	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58529509	1.00[ASN][1000 genomes]
rs60022096	1.00[ASN][1000 genomes]
rs60363317	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60971404	1.00[ASN][1000 genomes]
rs6488521	1.00[ASN][1000 genomes]
rs6488523	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6488524	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6488527	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7133988	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7134787	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714480	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7306292	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73287587	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7957014	1.00[ASN][1000 genomes]
rs7973069	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7975061	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7980390	1.00[ASN][1000 genomes]
rs888198	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv1812889	chr12:12510842-12593406	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12537200-12576000	Weak transcription	Primary B cells from cord blood	blood
2	chr12:12558000-12586000	Weak transcription	Pancreas	Pancrea
3	chr12:12562400-12576200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr12:12565200-12585000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr12:12569000-12576800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr12:12572600-12588400	Weak transcription	Primary T cells from cord blood	blood
7	chr12:12573000-12577000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr12:12573000-12577600	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links