Variant report

Variant	rs6495734
Chromosome Location	chr15:35315247-35315248
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35313065..35315808-chr15:35319182..35321746,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12324560	1.00[EUR][1000 genomes]
rs12324696	1.00[EUR][1000 genomes]
rs6495735	1.00[EUR][1000 genomes]
rs6495737	1.00[EUR][1000 genomes]
rs6495740	1.00[EUR][1000 genomes]
rs6495741	1.00[EUR][1000 genomes]
rs7165876	1.00[EUR][1000 genomes]
rs7174153	1.00[EUR][1000 genomes]
rs7177151	1.00[EUR][1000 genomes]
rs7182812	1.00[EUR][1000 genomes]
rs7183352	1.00[EUR][1000 genomes]
rs72704759	1.00[EUR][1000 genomes]
rs72704763	1.00[EUR][1000 genomes]
rs72704771	1.00[EUR][1000 genomes]
rs72704774	1.00[EUR][1000 genomes]
rs72704775	1.00[EUR][1000 genomes]
rs72704778	1.00[EUR][1000 genomes]
rs72704781	1.00[EUR][1000 genomes]
rs72705008	1.00[EUR][1000 genomes]
rs72705010	1.00[EUR][1000 genomes]
rs72705011	1.00[EUR][1000 genomes]
rs72705012	1.00[EUR][1000 genomes]
rs72705016	1.00[EUR][1000 genomes]
rs72705020	1.00[EUR][1000 genomes]
rs72705023	1.00[EUR][1000 genomes]
rs72705027	1.00[EUR][1000 genomes]
rs72705033	1.00[EUR][1000 genomes]
rs72705035	1.00[EUR][1000 genomes]
rs72705094	1.00[EUR][1000 genomes]
rs72705099	1.00[EUR][1000 genomes]
rs72707010	1.00[EUR][1000 genomes]
rs72707025	1.00[EUR][1000 genomes]
rs72707037	1.00[EUR][1000 genomes]
rs72707049	1.00[EUR][1000 genomes]
rs72707050	1.00[EUR][1000 genomes]
rs72707054	1.00[EUR][1000 genomes]
rs72707055	1.00[EUR][1000 genomes]
rs72707056	1.00[EUR][1000 genomes]
rs72707059	1.00[EUR][1000 genomes]
rs72707060	1.00[EUR][1000 genomes]
rs72707062	1.00[EUR][1000 genomes]
rs72707066	1.00[EUR][1000 genomes]
rs72707067	1.00[EUR][1000 genomes]
rs72707071	1.00[EUR][1000 genomes]
rs72707072	1.00[EUR][1000 genomes]
rs8025416	1.00[EUR][1000 genomes]
rs8028485	1.00[EUR][1000 genomes]
rs8029393	1.00[EUR][1000 genomes]
rs8031014	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9806356	1.00[EUR][1000 genomes]
rs9806378	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35306200-35320200	Weak transcription	HSMMtube	muscle
2	chr15:35311000-35317600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr15:35312000-35315800	Weak transcription	Primary B cells from cord blood	blood
4	chr15:35312200-35316000	Weak transcription	NHEK	skin
5	chr15:35312200-35316200	Weak transcription	K562	blood
6	chr15:35312400-35315800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:35312400-35335000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:35312600-35315800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:35312600-35315800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:35313000-35315800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr15:35313200-35315800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr15:35313800-35316000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr15:35313800-35316800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:35314000-35315800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr15:35314600-35315800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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