Variant report

Variant	rs8028485
Chromosome Location	chr15:35436685-35436686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35434378..35436303-chr15:35436631..35438983,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs12324560	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12324696	1.00[EUR][1000 genomes]
rs16960466	0.94[AFR][1000 genomes]
rs6495734	1.00[EUR][1000 genomes]
rs6495735	1.00[EUR][1000 genomes]
rs6495737	1.00[EUR][1000 genomes]
rs6495740	1.00[EUR][1000 genomes]
rs6495741	1.00[EUR][1000 genomes]
rs7165876	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7174153	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177151	1.00[EUR][1000 genomes]
rs7182812	1.00[EUR][1000 genomes]
rs7183352	1.00[EUR][1000 genomes]
rs72704759	1.00[EUR][1000 genomes]
rs72704763	1.00[EUR][1000 genomes]
rs72704771	1.00[EUR][1000 genomes]
rs72704774	1.00[EUR][1000 genomes]
rs72704775	1.00[EUR][1000 genomes]
rs72704778	1.00[EUR][1000 genomes]
rs72704781	1.00[EUR][1000 genomes]
rs72705008	1.00[EUR][1000 genomes]
rs72705010	1.00[EUR][1000 genomes]
rs72705011	1.00[EUR][1000 genomes]
rs72705012	1.00[EUR][1000 genomes]
rs72705016	1.00[EUR][1000 genomes]
rs72705020	1.00[EUR][1000 genomes]
rs72705023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72705027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72705033	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705035	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705094	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705099	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707010	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707049	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707050	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707054	1.00[EUR][1000 genomes]
rs72707055	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707056	1.00[EUR][1000 genomes]
rs72707059	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707060	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707062	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707063	1.00[ASN][1000 genomes]
rs72707066	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707067	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707071	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707072	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025416	1.00[EUR][1000 genomes]
rs8029393	1.00[EUR][1000 genomes]
rs8031014	1.00[EUR][1000 genomes]
rs9806356	1.00[EUR][1000 genomes]
rs9806378	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1052721	chr15:35381487-35437841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv1050526	chr15:35418676-35437841	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35431200-35451800	Weak transcription	Aorta	Aorta
2	chr15:35434400-35437400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:35435200-35437600	Weak transcription	Fetal Stomach	stomach
4	chr15:35435400-35437000	Weak transcription	Fetal Lung	lung
5	chr15:35435600-35437600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:35435800-35437200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:35435800-35437400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:35436000-35437200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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