Variant report

Variant	rs8029393
Chromosome Location	chr15:35415521-35415522
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs12324560	1.00[EUR][1000 genomes]
rs12324696	1.00[EUR][1000 genomes]
rs6495734	1.00[EUR][1000 genomes]
rs6495735	1.00[EUR][1000 genomes]
rs6495737	1.00[EUR][1000 genomes]
rs6495740	1.00[EUR][1000 genomes]
rs6495741	1.00[EUR][1000 genomes]
rs7165876	1.00[EUR][1000 genomes]
rs7166694	1.00[ASN][1000 genomes]
rs7174153	1.00[EUR][1000 genomes]
rs7177151	1.00[EUR][1000 genomes]
rs7182812	1.00[EUR][1000 genomes]
rs7183352	1.00[EUR][1000 genomes]
rs72704759	1.00[EUR][1000 genomes]
rs72704763	1.00[EUR][1000 genomes]
rs72704771	1.00[EUR][1000 genomes]
rs72704774	1.00[EUR][1000 genomes]
rs72704775	1.00[EUR][1000 genomes]
rs72704778	1.00[EUR][1000 genomes]
rs72704781	1.00[EUR][1000 genomes]
rs72705008	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705010	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705011	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705012	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705016	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705020	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705023	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705027	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705033	1.00[EUR][1000 genomes]
rs72705035	1.00[EUR][1000 genomes]
rs72705094	1.00[EUR][1000 genomes]
rs72705099	1.00[EUR][1000 genomes]
rs72707010	1.00[EUR][1000 genomes]
rs72707025	1.00[EUR][1000 genomes]
rs72707037	1.00[EUR][1000 genomes]
rs72707049	1.00[EUR][1000 genomes]
rs72707050	1.00[EUR][1000 genomes]
rs72707054	1.00[EUR][1000 genomes]
rs72707055	1.00[EUR][1000 genomes]
rs72707056	1.00[EUR][1000 genomes]
rs72707059	1.00[EUR][1000 genomes]
rs72707060	1.00[EUR][1000 genomes]
rs72707062	1.00[EUR][1000 genomes]
rs72707066	1.00[EUR][1000 genomes]
rs72707067	1.00[EUR][1000 genomes]
rs72707071	1.00[EUR][1000 genomes]
rs72707072	1.00[EUR][1000 genomes]
rs8025416	1.00[EUR][1000 genomes]
rs8026023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8028485	1.00[EUR][1000 genomes]
rs8031014	1.00[EUR][1000 genomes]
rs9806356	1.00[EUR][1000 genomes]
rs9806378	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1052721	chr15:35381487-35437841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv976920	chr15:35413394-35416762	Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35407600-35415600	Weak transcription	Pancreas	Pancrea
2	chr15:35413200-35419400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:35414000-35431000	Weak transcription	Aorta	Aorta
4	chr15:35414200-35416800	Weak transcription	Fetal Stomach	stomach

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