Variant report

Variant	rs72705027
Chromosome Location	chr15:35431146-35431147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35417869..35419650-chr15:35428948..35431359,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12324560	1.00[EUR][1000 genomes]
rs12324696	1.00[EUR][1000 genomes]
rs6495734	1.00[EUR][1000 genomes]
rs6495735	1.00[EUR][1000 genomes]
rs6495737	1.00[EUR][1000 genomes]
rs6495740	1.00[EUR][1000 genomes]
rs6495741	1.00[EUR][1000 genomes]
rs7165876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7166694	1.00[ASN][1000 genomes]
rs7174153	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7177151	1.00[EUR][1000 genomes]
rs7182812	1.00[EUR][1000 genomes]
rs7183352	1.00[EUR][1000 genomes]
rs72704759	1.00[EUR][1000 genomes]
rs72704763	1.00[EUR][1000 genomes]
rs72704771	1.00[EUR][1000 genomes]
rs72704774	1.00[EUR][1000 genomes]
rs72704775	1.00[EUR][1000 genomes]
rs72704778	1.00[EUR][1000 genomes]
rs72704781	1.00[EUR][1000 genomes]
rs72705008	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705010	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705011	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705012	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705016	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705020	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705023	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72705035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72705094	1.00[EUR][1000 genomes]
rs72705099	1.00[EUR][1000 genomes]
rs72707010	1.00[EUR][1000 genomes]
rs72707025	1.00[EUR][1000 genomes]
rs72707037	1.00[EUR][1000 genomes]
rs72707049	1.00[EUR][1000 genomes]
rs72707050	1.00[EUR][1000 genomes]
rs72707054	1.00[EUR][1000 genomes]
rs72707055	1.00[EUR][1000 genomes]
rs72707056	1.00[EUR][1000 genomes]
rs72707059	1.00[EUR][1000 genomes]
rs72707060	1.00[EUR][1000 genomes]
rs72707062	1.00[EUR][1000 genomes]
rs72707066	1.00[EUR][1000 genomes]
rs72707067	1.00[EUR][1000 genomes]
rs72707071	1.00[EUR][1000 genomes]
rs72707072	1.00[EUR][1000 genomes]
rs8025416	1.00[EUR][1000 genomes]
rs8028485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8029393	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8031014	1.00[EUR][1000 genomes]
rs9806356	1.00[EUR][1000 genomes]
rs9806378	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1052721	chr15:35381487-35437841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv1050526	chr15:35418676-35437841	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35426800-35433400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:35429000-35433800	Weak transcription	Fetal Intestine Large	intestine
3	chr15:35429000-35434800	Weak transcription	Ovary	ovary
4	chr15:35429200-35432000	Weak transcription	Fetal Heart	heart
5	chr15:35429400-35433000	Weak transcription	Fetal Intestine Small	intestine
6	chr15:35429400-35433000	Weak transcription	Fetal Lung	lung
7	chr15:35429400-35433000	Weak transcription	Fetal Stomach	stomach
8	chr15:35429600-35434800	Weak transcription	Left Ventricle	heart
9	chr15:35431000-35431200	ZNF genes & repeats	Aorta	Aorta
10	chr15:35431000-35431200	ZNF genes & repeats	Esophagus	oesophagus
11	chr15:35431000-35431200	ZNF genes & repeats	Fetal Muscle Trunk	muscle

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