Variant report

Variant	rs12324560
Chromosome Location	chr15:35482989-35482990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12324696	1.00[EUR][1000 genomes]
rs6495734	1.00[EUR][1000 genomes]
rs6495735	1.00[EUR][1000 genomes]
rs6495737	1.00[EUR][1000 genomes]
rs6495740	1.00[EUR][1000 genomes]
rs6495741	1.00[EUR][1000 genomes]
rs7165876	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7174153	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177151	1.00[EUR][1000 genomes]
rs7182812	1.00[EUR][1000 genomes]
rs7183352	1.00[EUR][1000 genomes]
rs72704759	1.00[EUR][1000 genomes]
rs72704763	1.00[EUR][1000 genomes]
rs72704771	1.00[EUR][1000 genomes]
rs72704774	1.00[EUR][1000 genomes]
rs72704775	1.00[EUR][1000 genomes]
rs72704778	1.00[EUR][1000 genomes]
rs72704781	1.00[EUR][1000 genomes]
rs72705008	1.00[EUR][1000 genomes]
rs72705010	1.00[EUR][1000 genomes]
rs72705011	1.00[EUR][1000 genomes]
rs72705012	1.00[EUR][1000 genomes]
rs72705016	1.00[EUR][1000 genomes]
rs72705020	1.00[EUR][1000 genomes]
rs72705023	1.00[EUR][1000 genomes]
rs72705027	1.00[EUR][1000 genomes]
rs72705033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705035	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705094	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705099	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707010	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707049	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707050	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707054	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72707055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72707059	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707060	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707062	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707063	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72707066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707067	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707071	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707072	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025416	1.00[EUR][1000 genomes]
rs8028485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8029393	1.00[EUR][1000 genomes]
rs8031014	1.00[EUR][1000 genomes]
rs9806356	1.00[EUR][1000 genomes]
rs9806378	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv904073	chr15:35467096-35686267	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35474000-35483800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:35481000-35484000	Weak transcription	Left Ventricle	heart
3	chr15:35482800-35483600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links