Variant report

Variant	rs72707056
Chromosome Location	chr15:35480500-35480501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:35466538..35468319-chr15:35479018..35480889,2	K562	blood:
2	chr15:35470643..35473276-chr15:35479917..35482066,2	K562	blood:
3	chr15:35470643..35474310-chr15:35479917..35482066,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATPBD4-3	chr15:35479650-35480640	NONHSAT041623

Variant related genes	Relation type
ENSG00000259516	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12324560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12324696	1.00[EUR][1000 genomes]
rs6495734	1.00[EUR][1000 genomes]
rs6495735	1.00[EUR][1000 genomes]
rs6495737	1.00[EUR][1000 genomes]
rs6495740	1.00[EUR][1000 genomes]
rs6495741	1.00[EUR][1000 genomes]
rs7165876	1.00[EUR][1000 genomes]
rs7174153	1.00[EUR][1000 genomes]
rs7177151	1.00[EUR][1000 genomes]
rs7182812	1.00[EUR][1000 genomes]
rs7183352	1.00[EUR][1000 genomes]
rs72704759	1.00[EUR][1000 genomes]
rs72704763	1.00[EUR][1000 genomes]
rs72704771	1.00[EUR][1000 genomes]
rs72704774	1.00[EUR][1000 genomes]
rs72704775	1.00[EUR][1000 genomes]
rs72704778	1.00[EUR][1000 genomes]
rs72704781	1.00[EUR][1000 genomes]
rs72705008	1.00[EUR][1000 genomes]
rs72705010	1.00[EUR][1000 genomes]
rs72705011	1.00[EUR][1000 genomes]
rs72705012	1.00[EUR][1000 genomes]
rs72705016	1.00[EUR][1000 genomes]
rs72705020	1.00[EUR][1000 genomes]
rs72705023	1.00[EUR][1000 genomes]
rs72705027	1.00[EUR][1000 genomes]
rs72705033	1.00[EUR][1000 genomes]
rs72705035	1.00[EUR][1000 genomes]
rs72705094	1.00[EUR][1000 genomes]
rs72705099	1.00[EUR][1000 genomes]
rs72707010	1.00[EUR][1000 genomes]
rs72707025	1.00[EUR][1000 genomes]
rs72707037	1.00[EUR][1000 genomes]
rs72707049	1.00[EUR][1000 genomes]
rs72707050	1.00[EUR][1000 genomes]
rs72707054	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72707055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72707059	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72707060	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72707062	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72707063	0.81[AMR][1000 genomes]
rs72707066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72707067	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72707071	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72707072	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8025416	1.00[EUR][1000 genomes]
rs8028485	1.00[EUR][1000 genomes]
rs8029393	1.00[EUR][1000 genomes]
rs8031014	1.00[EUR][1000 genomes]
rs9806356	1.00[EUR][1000 genomes]
rs9806378	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv904073	chr15:35467096-35686267	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35474000-35483800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:35479000-35481400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:35479200-35481400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:35479400-35481600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:35479600-35481200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:35479600-35481400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:35480400-35481000	Enhancers	NHDF-Ad	bronchial

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