Variant report

Variant	rs654101
Chromosome Location	chr6:150696138-150696139
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150674133..150675776-chr6:150694464..150696455,2	K562	blood:
2	chr6:150664294..150666420-chr6:150694752..150697036,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11969964	0.94[ASN][1000 genomes]
rs1339104	0.94[ASN][1000 genomes]
rs1339105	0.94[ASN][1000 genomes]
rs1339106	0.94[ASN][1000 genomes]
rs1339107	0.94[ASN][1000 genomes]
rs1339109	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1339110	0.91[ASN][1000 genomes]
rs2064213	0.91[ASN][1000 genomes]
rs57538858	0.89[ASN][1000 genomes]
rs602842	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs612200	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61253143	0.90[ASN][1000 genomes]
rs617594	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs618514	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62432478	0.87[ASN][1000 genomes]
rs62432481	0.86[ASN][1000 genomes]
rs62432482	0.94[ASN][1000 genomes]
rs62432483	0.91[ASN][1000 genomes]
rs62432484	0.90[ASN][1000 genomes]
rs629163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632337	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632829	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs652210	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs653588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs654476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs660382	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671675	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs683255	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749131	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7749894	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7757136	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7757456	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7761373	0.94[ASN][1000 genomes]
rs7772485	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9371429	0.91[ASN][1000 genomes]
rs9371991	0.88[ASN][1000 genomes]
rs9384445	0.80[ASN][1000 genomes]
rs9384466	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9397292	0.87[ASN][1000 genomes]
rs9397937	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480323	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150691000-150698200	Weak transcription	Stomach Mucosa	stomach
2	chr6:150691600-150700200	Weak transcription	Lung	lung
3	chr6:150692200-150698200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:150693200-150698400	Weak transcription	Fetal Intestine Large	intestine
5	chr6:150693400-150698000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:150693400-150698400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:150694000-150698200	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:150694800-150698200	Weak transcription	Right Atrium	heart
9	chr6:150694800-150698400	Weak transcription	Adipose Nuclei	Adipose
10	chr6:150694800-150698400	Weak transcription	Fetal Lung	lung
11	chr6:150695000-150697200	Weak transcription	Liver	Liver
12	chr6:150695000-150698200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:150695000-150698400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:150695200-150698400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:150695400-150698200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:150695400-150698600	Weak transcription	NHDF-Ad	bronchial
17	chr6:150695400-150703400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:150695600-150696800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:150696000-150698400	Weak transcription	Ovary	ovary

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