Variant report

Variant	rs7757456
Chromosome Location	chr6:150698052-150698053
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150688621..150691122-chr6:150696255..150698510,2	K562	blood:

Variant related genes	Relation type
ENSG00000009765	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11969964	0.90[ASN][1000 genomes]
rs1339104	0.90[ASN][1000 genomes]
rs1339105	0.90[ASN][1000 genomes]
rs1339106	0.90[ASN][1000 genomes]
rs1339107	0.90[ASN][1000 genomes]
rs1339109	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339110	0.94[ASN][1000 genomes]
rs2064213	0.87[ASN][1000 genomes]
rs57538858	0.86[ASN][1000 genomes]
rs612200	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61253143	0.87[ASN][1000 genomes]
rs617594	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs618514	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62432478	0.83[ASN][1000 genomes]
rs62432481	0.83[ASN][1000 genomes]
rs62432482	0.90[ASN][1000 genomes]
rs62432483	0.94[ASN][1000 genomes]
rs62432484	0.93[ASN][1000 genomes]
rs629163	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs630632	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs632337	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs632829	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs652210	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs653588	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs654101	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs654476	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs660382	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs671675	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs683255	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7745569	0.82[ASN][1000 genomes]
rs7749131	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7749894	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757136	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761373	0.90[ASN][1000 genomes]
rs7761906	0.82[ASN][1000 genomes]
rs7772485	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371429	0.94[ASN][1000 genomes]
rs9371991	0.85[ASN][1000 genomes]
rs9383808	0.82[ASN][1000 genomes]
rs9384466	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384472	0.81[ASN][1000 genomes]
rs9397292	0.83[ASN][1000 genomes]
rs9397937	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480323	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150691000-150698200	Weak transcription	Stomach Mucosa	stomach
2	chr6:150691600-150700200	Weak transcription	Lung	lung
3	chr6:150692200-150698200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:150693200-150698400	Weak transcription	Fetal Intestine Large	intestine
5	chr6:150693400-150698400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:150694000-150698200	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:150694800-150698200	Weak transcription	Right Atrium	heart
8	chr6:150694800-150698400	Weak transcription	Adipose Nuclei	Adipose
9	chr6:150694800-150698400	Weak transcription	Fetal Lung	lung
10	chr6:150695000-150698200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:150695000-150698400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:150695200-150698400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:150695400-150698200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:150695400-150698600	Weak transcription	NHDF-Ad	bronchial
15	chr6:150695400-150703400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:150696000-150698400	Weak transcription	Ovary	ovary
17	chr6:150696800-150699200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:150697200-150699200	Enhancers	Fetal Kidney	kidney
19	chr6:150697800-150698400	Enhancers	HepG2	liver
20	chr6:150697800-150699000	Enhancers	Liver	Liver
21	chr6:150698000-150698600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:150698000-150698800	Enhancers	Pancreas	Pancrea
23	chr6:150698000-150699000	Enhancers	Fetal Heart	heart
24	chr6:150698000-150699200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:150698000-150699200	Enhancers	Fetal Intestine Small	intestine

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