Variant report

Variant	rs1339110
Chromosome Location	chr6:150698554-150698555
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs11962096	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11969964	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12530375	1.00[CEU][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs1339104	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1339105	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1339106	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1339107	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1339109	0.94[ASN][1000 genomes]
rs1416481	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs1556881	1.00[CEU][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2064213	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2076284	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs2076285	1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2076286	1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2076287	1.00[CEU][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2076288	1.00[CEU][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2076289	1.00[CEU][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2076290	1.00[CEU][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2076291	1.00[CEU][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2076292	1.00[CEU][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3734734	1.00[CEU][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3823259	1.00[CEU][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3823260	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4407723	1.00[CEU][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5029121	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs57538858	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs602842	0.86[JPT][hapmap]
rs612200	0.86[ASN][1000 genomes]
rs61253143	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs617594	0.91[ASN][1000 genomes]
rs618514	0.91[ASN][1000 genomes]
rs62432478	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62432481	0.89[ASN][1000 genomes]
rs62432482	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62432483	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62432484	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62432506	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62432511	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62432540	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62432541	0.81[EUR][1000 genomes]
rs62432542	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs629163	0.91[ASN][1000 genomes]
rs630632	0.91[ASN][1000 genomes]
rs632337	0.91[ASN][1000 genomes]
rs632829	0.91[ASN][1000 genomes]
rs652210	0.86[ASN][1000 genomes]
rs653588	0.91[ASN][1000 genomes]
rs654101	0.91[ASN][1000 genomes]
rs654476	0.91[ASN][1000 genomes]
rs660382	0.94[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs671675	0.88[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs683255	0.94[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs6909655	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6921360	0.81[EUR][1000 genomes]
rs73617698	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7745569	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7749131	0.92[ASN][1000 genomes]
rs7749894	0.94[ASN][1000 genomes]
rs7757136	0.94[ASN][1000 genomes]
rs7757456	0.94[ASN][1000 genomes]
rs7761373	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7761906	1.00[CEU][hapmap];0.93[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7762616	0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs7769542	0.84[AMR][1000 genomes]
rs7770389	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7772485	0.94[ASN][1000 genomes]
rs7774077	1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9322259	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9371429	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371437	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9371991	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9372012	1.00[CEU][hapmap]
rs9383808	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9384445	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9384466	0.94[ASN][1000 genomes]
rs9384472	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9384473	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9384474	0.85[ASN][1000 genomes]
rs9384476	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9397292	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9397302	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9397303	0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9397937	0.94[ASN][1000 genomes]
rs9397944	1.00[CEU][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9480323	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150691600-150700200	Weak transcription	Lung	lung
2	chr6:150695400-150698600	Weak transcription	NHDF-Ad	bronchial
3	chr6:150695400-150703400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:150696800-150699200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:150697200-150699200	Enhancers	Fetal Kidney	kidney
6	chr6:150697800-150699000	Enhancers	Liver	Liver
7	chr6:150698000-150698600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:150698000-150698800	Enhancers	Pancreas	Pancrea
9	chr6:150698000-150699000	Enhancers	Fetal Heart	heart
10	chr6:150698000-150699200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:150698000-150699200	Enhancers	Fetal Intestine Small	intestine
12	chr6:150698200-150698600	Enhancers	Fetal Muscle Trunk	muscle
13	chr6:150698200-150698600	Enhancers	Stomach Mucosa	stomach
14	chr6:150698200-150698800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:150698200-150698800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:150698200-150698800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr6:150698200-150698800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
18	chr6:150698200-150698800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:150698200-150698800	Enhancers	Brain Anterior Caudate	brain
20	chr6:150698200-150698800	Enhancers	Brain Cingulate Gyrus	brain
21	chr6:150698200-150698800	Enhancers	Right Atrium	heart
22	chr6:150698200-150699000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:150698200-150699000	Enhancers	Brain Substantia Nigra	brain
24	chr6:150698200-150699000	Enhancers	Osteobl	bone
25	chr6:150698200-150699200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:150698200-150699200	Enhancers	Brain Hippocampus Middle	brain
27	chr6:150698400-150698600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:150698400-150698600	Bivalent Enhancer	Fetal Muscle Leg	muscle
29	chr6:150698400-150698800	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr6:150698400-150698800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:150698400-150698800	Enhancers	Adipose Nuclei	Adipose
32	chr6:150698400-150698800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:150698400-150698800	Enhancers	Gastric	stomach
34	chr6:150698400-150698800	Enhancers	Ovary	ovary
35	chr6:150698400-150698800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr6:150698400-150698800	Enhancers	Spleen	Spleen
37	chr6:150698400-150698800	Bivalent Enhancer	NH-A	brain
38	chr6:150698400-150699000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:150698400-150699000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:150698400-150699000	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr6:150698400-150699000	Enhancers	Fetal Lung	lung
42	chr6:150698400-150699000	Flanking Active TSS	HepG2	liver
43	chr6:150698400-150699200	Enhancers	Fetal Intestine Large	intestine
44	chr6:150698400-150699200	Enhancers	K562	blood

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