The 2.0 version of rSNPBase

Variant report

Variant rs6588196
Chromosome Location chr1:47743490-47743491
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:47705200-47766400 Weak transcription Placenta Amnion Placenta Amnion
2 chr1:47705600-47766400 Weak transcription Primary T cells from cord blood blood
3 chr1:47709800-47745000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr1:47712800-47745600 Weak transcription Fetal Brain Female brain
5 chr1:47713200-47745800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr1:47713800-47745800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
7 chr1:47714400-47779200 Weak transcription Small Intestine intestine
8 chr1:47714600-47745800 Weak transcription Primary B cells from cord blood blood
9 chr1:47714600-47778400 Weak transcription Fetal Heart heart
10 chr1:47714800-47746000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr1:47715600-47749200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr1:47716600-47772600 Strong transcription Dnd41 blood
13 chr1:47717000-47745800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
14 chr1:47718200-47746000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:47719800-47745800 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr1:47720400-47757000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr1:47720600-47766400 Weak transcription Brain Germinal Matrix brain
18 chr1:47721000-47749000 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr1:47721600-47766800 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr1:47723400-47772400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
21 chr1:47726000-47745200 Weak transcription Fetal Intestine Large intestine
22 chr1:47726200-47745800 Weak transcription Primary hematopoietic stem cells blood
23 chr1:47726800-47745200 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr1:47727000-47745800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
25 chr1:47728400-47745600 Weak transcription NHLF lung
26 chr1:47728600-47755200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
27 chr1:47729000-47767000 Weak transcription ES-WA7 Cell Line embryonic stem cell
28 chr1:47729200-47746000 Weak transcription Placenta Placenta
29 chr1:47730400-47770200 Weak transcription Colonic Mucosa Colon
30 chr1:47730800-47755000 Weak transcription Primary T regulatory cells fromperipheralblood blood
31 chr1:47730800-47766400 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr1:47731400-47778000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
33 chr1:47733200-47745600 Weak transcription Muscle Satellite Cultured Cells --
34 chr1:47735200-47754000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
35 chr1:47735400-47779000 Weak transcription Esophagus oesophagus
36 chr1:47735800-47745000 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr1:47735800-47745800 Weak transcription NH-A brain
38 chr1:47736600-47745800 Weak transcription Osteobl bone
39 chr1:47736800-47745400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr1:47737400-47744600 Weak transcription Fetal Intestine Small intestine
41 chr1:47737400-47745000 Weak transcription iPS-15b Cell Line embryonic stem cell
42 chr1:47737400-47745600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr1:47737400-47745600 Weak transcription Fetal Muscle Leg muscle
44 chr1:47737600-47745200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
45 chr1:47738000-47745000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
46 chr1:47738000-47745400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr1:47738000-47745600 Weak transcription Duodenum Mucosa Duodenum
48 chr1:47738000-47745600 Weak transcription Fetal Muscle Trunk muscle
49 chr1:47738000-47745800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr1:47738000-47745800 Weak transcription HMEC breast

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Last update: Aug 31, 2015