Variant report

Variant	rs11211480
Chromosome Location	chr1:47693220-47693221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1015890	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10890471	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211479	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11211481	0.92[CEU][hapmap];1.00[CHD][hapmap];0.80[MEX][hapmap];0.80[TSI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12141363	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12145836	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12407157	0.83[EUR][1000 genomes]
rs2008713	0.83[EUR][1000 genomes]
rs2984618	0.92[CEU][hapmap];1.00[CHD][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes]
rs34087210	0.82[EUR][1000 genomes]
rs4134058	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926521	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926524	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926725	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926726	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61782665	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61784776	1.00[ASN][1000 genomes]
rs6588196	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6658125	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6692253	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695898	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6700838	0.92[CEU][hapmap];1.00[CHD][hapmap];0.80[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6701381	0.84[EUR][1000 genomes]
rs743270	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525145	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7534271	0.92[CEU][hapmap];1.00[CHD][hapmap];0.80[MEX][hapmap];0.80[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7545034	0.82[GIH][hapmap];0.81[TSI][hapmap];1.00[ASN][1000 genomes]
rs7664	0.92[CEU][hapmap];0.80[TSI][hapmap];0.84[EUR][1000 genomes]
rs911910	0.82[EUR][1000 genomes]
rs977747	0.92[CEU][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
Clozapine-induced agranulocytosis	25187353	GWAS catalog

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11211480	TAL1	cis	Esophagus Muscularis	GTEx
rs11211480	RP1-18D14.7	cis	Whole Blood	GTEx
rs11211480	PDZK1IP1	cis	multi-tissue	Pritchard
rs11211480	STIL	cis	cerebellum	SCAN
rs11211480	CMPK1	cis	lymphoblastoid	seeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47689800-47696600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:47690000-47697600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:47690200-47696800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr1:47690400-47693600	Enhancers	Spleen	Spleen
5	chr1:47691000-47694400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr1:47691600-47694400	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr1:47691600-47694800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:47691800-47695200	Weak transcription	Pancreas	Pancrea
9	chr1:47691800-47695600	Flanking Active TSS	HUVEC	blood vessel
10	chr1:47692000-47693800	Transcr. at gene 5' and 3'	K562	blood
11	chr1:47692200-47693800	Bivalent Enhancer	Left Ventricle	heart
12	chr1:47692200-47694200	Bivalent Enhancer	Adipose Nuclei	Adipose
13	chr1:47692200-47694400	Enhancers	Primary hematopoietic stem cells	blood
14	chr1:47692400-47693400	Enhancers	Right Atrium	heart
15	chr1:47692400-47696600	Weak transcription	Gastric	stomach
16	chr1:47692600-47693800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
17	chr1:47692600-47694200	Weak transcription	Lung	lung

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