Variant report

Variant	rs2008713
Chromosome Location	chr1:47702368-47702369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1015890	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789504	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890472	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11211481	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211482	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12057184	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12083555	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12141363	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144626	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12407157	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1543502	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2984618	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34087210	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61782665	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669341	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6695898	0.80[EUR][1000 genomes]
rs6700838	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701381	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs741959	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525145	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534271	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs765861	1.00[ASN][1000 genomes]
rs7664	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs911910	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs977747	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2008713	RP1-18D14.7	cis	Whole Blood	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47698200-47704400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr1:47698600-47703800	Enhancers	Primary hematopoietic stem cells	blood
3	chr1:47699200-47702400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
4	chr1:47699400-47703200	Enhancers	K562	blood
5	chr1:47700200-47702400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:47701200-47704000	Enhancers	HUVEC	blood vessel
7	chr1:47701400-47703400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:47701600-47705600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr1:47701800-47703200	Weak transcription	Adipose Nuclei	Adipose
10	chr1:47701800-47704800	Weak transcription	Spleen	Spleen
11	chr1:47701800-47705600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:47702000-47705800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:47702200-47704800	Weak transcription	Lung	lung
14	chr1:47702200-47707000	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links