Variant report

Variant	rs911910
Chromosome Location	chr1:47706970-47706971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47705490..47714722-chr1:47717231..47723503,17	K562	blood:
2	chr1:47706169..47709093-chr1:47709485..47711498,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1015890	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789504	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890472	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11211480	0.92[CEU][hapmap]
rs11211481	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211482	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12057184	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12083555	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12141363	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144626	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12407157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1543502	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1810658	0.84[AMR][1000 genomes]
rs2008713	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2984618	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34087210	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61782665	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669341	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6700838	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701381	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs741959	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525145	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534271	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs765861	1.00[ASN][1000 genomes]
rs7664	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs977747	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs911910	RP1-18D14.7	cis	Whole Blood	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47702200-47707000	Weak transcription	Placenta	Placenta
2	chr1:47705200-47707000	Enhancers	K562	blood
3	chr1:47705200-47766400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:47705600-47707000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:47705600-47707000	Weak transcription	Hela-S3	cervix
6	chr1:47705600-47766400	Weak transcription	Primary T cells from cord blood	blood
7	chr1:47705800-47707000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:47705800-47709400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:47705800-47714800	Weak transcription	Fetal Thymus	thymus
10	chr1:47706400-47709200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr1:47706800-47707000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
12	chr1:47706800-47707200	Enhancers	Lung	lung
13	chr1:47706800-47707600	Enhancers	Left Ventricle	heart
14	chr1:47706800-47707600	Enhancers	Right Atrium	heart
15	chr1:47706800-47707800	Enhancers	HUVEC	blood vessel
16	chr1:47706800-47708000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr1:47706800-47708200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:47706800-47709800	Enhancers	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links