Variant report

Variant	rs977747
Chromosome Location	chr1:47684677-47684678
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1015890	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10789504	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10890471	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10890472	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211479	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11211480	0.92[CEU][hapmap];0.80[TSI][hapmap]
rs11211481	1.00[CEU][hapmap];0.85[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11211482	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12057184	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12083555	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141363	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12144626	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145836	0.81[AMR][1000 genomes]
rs12407157	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1543502	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1810658	1.00[ASN][1000 genomes]
rs2008713	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2984618	1.00[CEU][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34087210	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3737771	1.00[JPT][hapmap]
rs4134058	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4926521	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4926524	0.84[AMR][1000 genomes]
rs4926725	0.84[AMR][1000 genomes]
rs4926726	0.83[AMR][1000 genomes]
rs61782665	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6658125	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6669341	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6692253	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6695898	0.81[AMR][1000 genomes]
rs6700838	1.00[CEU][hapmap];0.85[GIH][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6701381	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72637985	0.81[ASN][1000 genomes]
rs741959	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs743270	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7525145	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7534271	1.00[CEU][hapmap];0.85[GIH][hapmap];0.83[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7664	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs911910	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs977747	RP1-18D14.7	cis	Whole Blood	GTEx
rs977747	CYP4A11	cis	parietal	SCAN
rs977747	CMPK1	cis	lymphoblastoid	seeQTL
rs977747	STIL	cis	cerebellum	SCAN
rs977747	BEST4	cis	cerebellum	SCAN
rs977747	MPL	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47674400-47690600	Weak transcription	Gastric	stomach
2	chr1:47679200-47686200	Weak transcription	Left Ventricle	heart
3	chr1:47679200-47687000	Weak transcription	Adipose Nuclei	Adipose
4	chr1:47679200-47689400	Weak transcription	Lung	lung
5	chr1:47679400-47684800	Weak transcription	Spleen	Spleen
6	chr1:47679600-47689000	Weak transcription	Right Atrium	heart
7	chr1:47680600-47685800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:47681800-47689600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr1:47683600-47690000	Strong transcription	K562	blood
10	chr1:47683800-47690000	Strong transcription	HUVEC	blood vessel
11	chr1:47684000-47685000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:47684600-47684800	Bivalent Enhancer	Fetal Brain Male	brain
13	chr1:47684600-47687400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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